View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_high_56 (Length: 251)
Name: NF1999_high_56
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_high_56 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 34685629 - 34685868
Alignment:
| Q |
12 |
cacagacacaactatattattaccagcagcaacaaattttcattacaaagactgtatggtagataatctgtctagaaattgagtaaaattttcatcagta |
111 |
Q |
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| T |
34685629 |
cacacacacaactatattattaccagcagcaacaaattttcattacaaagactgtatggtagataatctgtctagaaattgagtaaaattttcatcagta |
34685728 |
T |
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| Q |
112 |
tccaacaagctaattcttacatattttgggctaaccccaaagtgttttccacttctcgttatgatgttgtgtgctctaaggaagctttcacagtcttcca |
211 |
Q |
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| T |
34685729 |
tccaacaagctaattcttacatattttgggctaaccccaaagtgttttccacttctcgttatgatgttgtgtgctctaaggaagctttcacagtcttcca |
34685828 |
T |
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| Q |
212 |
catttccctcacacttcaaccacacaaaagctgcaaaata |
251 |
Q |
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| T |
34685829 |
catttccctcacacttcaaccacacaaaagctgcaaaata |
34685868 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 43611302 - 43611374
Alignment:
| Q |
95 |
taaaattttcatcagtatccaacaagctaattcttacatattttgggctaaccccaaagtgttttccacttct |
167 |
Q |
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| T |
43611302 |
taaaatgttcatctgtatccaacatgctaattcttacatattttgggctcgccccaaattgttcaccacttct |
43611374 |
T |
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