View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_high_58 (Length: 249)
Name: NF1999_high_58
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_high_58 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 34685584 - 34685348
Alignment:
| Q |
1 |
agatgtataagatgtatggaatcacattttagaattcaaattattgctgaattttagttaaatttgaattgattgagagtgtcccaatttaaatatgacc |
100 |
Q |
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| T |
34685584 |
agatgtataagatgtatggaatcacatgttagaattcaagttattgctgaattttagttaaagttgaattgattgagagtgtcccaatttaaatatgacc |
34685485 |
T |
|
| Q |
101 |
ggaaccatcataagttgaataagtttagttgaactatggcaactccattggggaatagtggactgaaataaatgaataaaaaacatgagtannnnnnnnc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34685484 |
ggaaccatcataagttgaataagtttagttgaactatggcaactccattggggaatagtggactgaaataaatgaataaaaaacatgagtattttttttt |
34685385 |
T |
|
| Q |
201 |
ct--aagagaaaaatatgagtataattaaagaggagt |
235 |
Q |
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|| |||||||||||||||||||||||||||||||| |
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| T |
34685384 |
ctgagagagaaaaatatgagtataattaaagaggagt |
34685348 |
T |
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