View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1999_high_64 (Length: 239)
Name: NF1999_high_64
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_high_64 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 34686088 - 34685874
Alignment:
| Q |
18 |
catcatagtgaattgttcagcttatcccaattttcccctgcattttgtaactttttcaatcgagtgttggaacctcaaccaggtattatactatactata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34686088 |
catcatagtgaattgttcagcttatcccaattttcccctgcattttgtaactttttcaatcgagtgttggaacctcaaccaggtattatactatactata |
34685989 |
T |
|
| Q |
118 |
ctatactatagcttaatttgacataaaattacatttgcagtgattaaaacaattagattagataatacaacttcctaagtagatttcttgtcgaaatgtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34685988 |
ctatactatagcttaatttgacataaaattacatttgcagtgattaaaacaattagattagataatacaacttcctaagtagatttcttgtcgaaatgtt |
34685889 |
T |
|
| Q |
218 |
tatgtatgtattcat |
232 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34685888 |
tatgtatgtattcat |
34685874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University