View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1999_high_9 (Length: 516)

Name: NF1999_high_9
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1999_high_9
NF1999_high_9
[»] chr2 (12 HSPs)
chr2 (13-497)||(2321425-2321931)
chr2 (152-498)||(2294109-2294464)
chr2 (273-498)||(2310440-2310665)
chr2 (178-497)||(2303723-2304046)
chr2 (273-497)||(2327278-2327502)
chr2 (274-497)||(2351299-2351522)
chr2 (292-498)||(2330992-2331198)
chr2 (13-132)||(2294512-2294632)
chr2 (62-132)||(2339306-2339375)
chr2 (95-132)||(2304241-2304278)
chr2 (60-132)||(2331412-2331484)
chr2 (149-254)||(2327562-2327664)
[»] chr8 (4 HSPs)
chr8 (288-495)||(41127307-41127517)
chr8 (288-361)||(26507056-26507129)
chr8 (395-494)||(26494893-26494992)
chr8 (448-491)||(26506923-26506966)
[»] chr5 (1 HSPs)
chr5 (448-497)||(15176356-15176405)
[»] chr4 (1 HSPs)
chr4 (448-495)||(55017086-55017133)


Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 497
Target Start/End: Complemental strand, 2321931 - 2321425
Alignment:
Q  13 aaaataaaacaactttgatattacaaaaacaagatcatattttttatacattgaaagtatcttgacttacaagaatgacagacatgttttattttataca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321931 aaaataaaacaactttgatattacaaaaacaagatcatattttttatacattgaaagtatcttgacttacaagaatgacagacatgttttattttataca 2321832  T
Q  113 agaaacaagatatataagaagtaagggatc--attgtat--------------tgtatgaaacaaaatcccaccatatgagaaatccacatataatattc 196  Q
    |||||||||||||||||||||||||| ||   | |||||              ||||||||||||||||| |||||||||||||||||||||||||||||    
T  2321831 agaaacaagatatataagaagtaaggcatatgaatgtatgcataagggatcattgtatgaaacaaaatccgaccatatgagaaatccacatataatattc 2321732  T
Q  197 ccctgttgtgttatgacattctcaagcagagaatctagagtggttcacacaacaacattacatactccaaatcgttacacataac---------ctatac 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||         ||||||    
T  2321731 ccctgttgtgttatgacattctcaagcagagaatctagagtggttcacacaaca---ttacatactccaaatcgttacacataacacacataatctatac 2321635  T
Q  288 cctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctccggaagctgccaattg 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2321634 cctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccaccctccggaagctgccaattg 2321535  T
Q  388 aaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatcttta 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321534 aaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatcttta 2321435  T
Q  488 tctctttact 497  Q
    ||||||||||    
T  2321434 tctctttact 2321425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 152 - 498
Target Start/End: Complemental strand, 2294464 - 2294109
Alignment:
Q  152 tatgaaacaaaatcccaccatatgagaaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacacaacaa 251  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2294464 tatgaaacaaaatcccaccatatgacaaatccacatataatactcccctgctgtgttatgacattctcaagcagagaatctagggtggttcacacaacaa 2294365  T
Q  252 cattacatactccaaatcgttacacataac---------ctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatct 342  Q
    |||||||||||||| ||||||||| |||||         ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | |    
T  2294364 cattacatactccacatcgttacatataacacacataatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatggtgaattcttgt 2294265  T
Q  343 ttttccgacaaatcaacatggccgccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaa 442  Q
     |||||| |||||||||||| |||||||| |||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2294264 atttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaa 2294165  T
Q  443 gtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactt 498  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2294164 gtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttactt 2294109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 273 - 498
Target Start/End: Complemental strand, 2310665 - 2310440
Alignment:
Q  273 acacataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctcc 372  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||| |||||||||||| ||||||||     
T  2310665 acacataatctatatcctaggagaaatatgaacttgcactggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctct 2310566  T
Q  373 ggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaa 472  Q
    |||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2310565 ggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaa 2310466  T
Q  473 acggcatcatctttatctctttactt 498  Q
    ||||||||||||||||||||||||||    
T  2310465 acggcatcatctttatctctttactt 2310440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 178 - 497
Target Start/End: Complemental strand, 2304046 - 2303723
Alignment:
Q  178 aaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacacaacaacattacat-----actccaaatcgtt 272  Q
    |||||||||||||||||| |  || |||||||||||||||||||||||||||||||||||||||||||||  |||||   ||     | | || ||        
T  2304046 aaatccacatataatatttctttgctgtgttatgacattctcaagcagagaatctagagtggttcacacaggaacatacgatttatcattacacataaaa 2303947  T
Q  273 acacataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctcc 372  Q
    | |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| |||||||||     
T  2303946 a-acataatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatattgaattcttgtttttccgacaaatcaacatagccgccctct 2303848  T
Q  373 ggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaa 472  Q
    ||||||| ||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||| |||    
T  2303847 ggaagcttccaatcgaaattccaaaccaaattagccacaaaatattctaaatggagcaaagctaaattaagtgcaggacaaattctcctttcagcttcaa 2303748  T
Q  473 acggcatcatctttatctctttact 497  Q
    ||||||||||||||||||| |||||    
T  2303747 acggcatcatctttatctccttact 2303723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 273 - 497
Target Start/End: Complemental strand, 2327502 - 2327278
Alignment:
Q  273 acacataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctcc 372  Q
    |||||||| |||||  ||| ||||||||||||||||||||||||||||||||||||  |||||||||  |||||| |||||||| |||||||| ||||||    
T  2327502 acacataatctatattctatgagaaatatgaacttgcaatggatttttcatcaccacggtgaattcaaatttttctgacaaatcgacatggccaccctcc 2327403  T
Q  373 ggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaa 472  Q
    |||| || ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  ||| |||||||||||||| ||||||||||    
T  2327402 ggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattctcctaccagctccaa 2327303  T
Q  473 acggcatcatctttatctctttact 497  Q
    ||||||||||||| |||||||||||    
T  2327302 acggcatcatcttgatctctttact 2327278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 274 - 497
Target Start/End: Complemental strand, 2351522 - 2351299
Alignment:
Q  274 cacataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctccg 373  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| || || || |    
T  2351522 cacataaactatatcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctg 2351423  T
Q  374 gaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaa 473  Q
    ||| || ||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||||||  ||||||||| |||||||| ||| | |||||    
T  2351422 gaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaa 2351323  T
Q  474 cggcatcatctttatctctttact 497  Q
     |||||||||||||||||||||||    
T  2351322 tggcatcatctttatctctttact 2351299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 292 - 498
Target Start/End: Complemental strand, 2331198 - 2330992
Alignment:
Q  292 ggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccgccctccggaagctgccaattgaaat 391  Q
    |||||||||||| | ||||||||||||||||| |||||||||||||| | ||| || |||||||||||  | || ||||| |||| || ||||| |||||    
T  2331198 ggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaaccttccaatcgaaat 2331099  T
Q  392 tccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctc 491  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  2331098 tccaaaccaaattagccacaaaatattccaaatgaagcaaagctaaattatatccaggacaaattctcctcccagctccaaatggcatcatctttatctc 2330999  T
Q  492 tttactt 498  Q
    |||||||    
T  2330998 tttactt 2330992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 2294632 - 2294512
Alignment:
Q  13 aaaataaaacaactttgatattacaaaaacaa-gatcatattttttatacattgaaagtatcttgacttacaagaatgacagac-atgttttattttata 110  Q
    |||||||| ||||||  ||||||| | ||||| |||||||| |||| |||| |||||||||||||||||||||||||||||| | | |||||  ||||||    
T  2294632 aaaataaaccaacttcaatattactacaacaaagatcatatatttt-tacaatgaaagtatcttgacttacaagaatgacaggcaaagtttttatttata 2294534  T
Q  111 caagaaacaagatatataagaa 132  Q
    || |||||||||||||||||||    
T  2294533 caggaaacaagatatataagaa 2294512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 2339375 - 2339306
Alignment:
Q  62 attgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaa 132  Q
    ||||||||||||||| ||||| |||||| || ||||||||||||||||||||||||| |||||||||||||    
T  2339375 attgaaagtatcttg-cttaccagaatgccaaacatgttttattttatacaagaaacgagatatataagaa 2339306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 2304278 - 2304241
Alignment:
Q  95 catgttttattttatacaagaaacaagatatataagaa 132  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2304278 catgttttattttatacaagaaacaagatatataagaa 2304241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 2331484 - 2331412
Alignment:
Q  60 acattgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaa 132  Q
    |||||||| |||||||| ||| |||||| | ||  |||||||||||||||| |||||||||||||| ||||||    
T  2331484 acattgaatgtatcttggcttgcaagaaggtcatgcatgttttattttatataagaaacaagatatgtaagaa 2331412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 2327664 - 2327562
Alignment:
Q  149 ttgtatgaaacaaaatcccacca-tatgagaaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacaca 247  Q
    ||||||||| |||||||  |||| | ||| ||||| |||||||||||||| ||||   |||||||||||  |||| |||||||||||  |||||||||||    
T  2327664 ttgtatgaagcaaaatcttaccaatgtgacaaatctacatataatattccgctgt---gttatgacattgccaag-agagaatctaggatggttcacaca 2327569  T
Q  248 acaacat 254  Q
    |||||||    
T  2327568 acaacat 2327562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 495
Target Start/End: Complemental strand, 41127517 - 41127307
Alignment:
Q  288 cctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggccg---ccctccggaagctgccaa 384  Q
    ||||||||||||||||||||||| |||||||||||| ||||  |||||||||  ||||||||||||||||||||  ||    |||||  ||| || ||||    
T  41127517 cctaggagaaatatgaacttgcagtggatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccctctagaatcttccaa 41127418  T
Q  385 ttgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatct 484  Q
    || |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||  ||| |||||||||||||| ||| ||||||||||||||||||    
T  41127417 ttaaaattccagaccaaattagccacaaagtattccaaatggagcaaagctaaattatatccaggacaaattctcctcccaactccaaacggcatcatct 41127318  T
Q  485 ttatctcttta 495  Q
    |||||||||||    
T  41127317 ttatctcttta 41127307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 26507129 - 26507056
Alignment:
Q  288 cctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacat 361  Q
    ||||||||| || ||| ||| |||||||| ||||||||||||||| ||||| | |||||| |||||||||||||    
T  26507129 cctaggagatatttgagcttccaatggatatttcatcaccatagtaaattcctgtttttctgacaaatcaacat 26507056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 494
Target Start/End: Complemental strand, 26494992 - 26494893
Alignment:
Q  395 aaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctcttt 494  Q
    ||||||| ||||| ||||| ||||| ||||||||||  || || |||    | |||||||| ||||| || |||||||||||||||||||||||||||||    
T  26494992 aaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggcatcatctttatctcttt 26494893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 491
Target Start/End: Complemental strand, 26506966 - 26506923
Alignment:
Q  448 ggacaaattctccttccagctccaaacggcatcatctttatctc 491  Q
    |||||||| |||||||| |||||||| |||||||||||||||||    
T  26506966 ggacaaatcctccttcctgctccaaatggcatcatctttatctc 26506923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 448 - 497
Target Start/End: Original strand, 15176356 - 15176405
Alignment:
Q  448 ggacaaattctccttccagctccaaacggcatcatctttatctctttact 497  Q
    ||||| |||||||| || |||||||| |||||||||||||||||||||||    
T  15176356 ggacacattctcctccctgctccaaatggcatcatctttatctctttact 15176405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 495
Target Start/End: Complemental strand, 55017133 - 55017086
Alignment:
Q  448 ggacaaattctccttccagctccaaacggcatcatctttatctcttta 495  Q
    |||||||| ||||| ||||| ||||||||||||||||| |||||||||    
T  55017133 ggacaaatcctcctcccagcaccaaacggcatcatcttcatctcttta 55017086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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