View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_1 (Length: 1176)
Name: NF1999_low_1
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 640; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 8 - 740
Target Start/End: Complemental strand, 48393645 - 48392927
Alignment:
| Q |
8 |
gacatcatcaaaaaacgcaaaataaagaacggtgaagtttccactgcaaaataagcaaaagacagtacaaactaaacctgaggaacatgatcacatgaac |
107 |
Q |
| |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48393645 |
gacatcctcaaaaaatgcaaaataaagaacggtgaagtttccactgcaaaataagcaaaagacagtacaaactaaacctgaggaacatgatcacatgaac |
48393546 |
T |
|
| Q |
108 |
gtggaacaactgctccaccaagtcctggccgacacggaacttgcttccccttcttacaattcttacatatcaaggtcacatatgttgcttttgccttagt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48393545 |
gtggaacaactgctccaccaagtcctggccgacacggaacttgcttccccttcttacaattcttacatatcaaggtcacatatgttgcttttgccttagt |
48393446 |
T |
|
| Q |
208 |
cctcgacgcagcaattgttatcccagcgattttaacaagctttgaaatgtactgagcctacgaaaatgatnnnnnnnntaatcaacttgatgtaacctca |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48393445 |
cctcgacgcagcaattgttatcccagcgattttaacaagcttcgaaatgtactgagcctacgaaaatgataaaaaaa-taatcaacttgatgtaacctca |
48393347 |
T |
|
| Q |
308 |
aatataccaaatgctcaaaattaaataagaatcaacttgtttcaagacagcaagcaaatatatctcaattgaaaccctaagcacttgaatttcaataatt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48393346 |
aatataccaaatgctcaaaattaaataagaatcaacttgtttcaagacaacaagcaaatatatctcaattgaaaccctaagcacttgaatttcaataatt |
48393247 |
T |
|
| Q |
408 |
tgtgaaaatgacacaattgaattgaatcacatgtgtcagtgtcacacaccagacacacgcaccttctattagaagtgttggtgttacaagagcaaatacc |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48393246 |
tgtgaaaatgacacaattgaattgaatcacatgtgtcagtgtcacacacc-------------ttctattagaagtgttggtgttacaagagcaaatacc |
48393160 |
T |
|
| Q |
508 |
tcaattggaaccctaactccctaaccatcttcataaacacaattaaaaaccataataaacaattaaacacaaaattagttataatcaactcaccccaagc |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48393159 |
tcaattggaaccctaactccctaaccatcttcaaaaacacaattaaaaaccataataaacaattaaacacaaaattagttataatcaactcaccccaagc |
48393060 |
T |
|
| Q |
608 |
gatctcatggaaacggaatcctccttagaagtaagaagaatctgaacatcaccaggagcagcatcttccatatcaccagtatctccagcaaccttcgtct |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48393059 |
gatctcatggaaacggaatcctccttagaagtaagaagaatctgaacatcaccaggagcagcatcttccatatcaccagtatctccagcaaccttcgtct |
48392960 |
T |
|
| Q |
708 |
tcaaactcaccaaaacctgcgccgccgcagttt |
740 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
48392959 |
tcaaactcaccaaaacctgcgccgccgcagttt |
48392927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 800 - 1159
Target Start/End: Complemental strand, 48392867 - 48392508
Alignment:
| Q |
800 |
gtcatcaaccgacgaagatcggagtttagaagaaattaccagaggaagaatatcggcgggagcagatcggagtttagagggaagatcagggtcaaaagag |
899 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48392867 |
gtcatcaaccgacgaagatcggagtttagaagaaattaccagaggaagaatatcggcgggagcagatcggagtttagagggaagatcagggtcaaaagag |
48392768 |
T |
|
| Q |
900 |
tcaagatcttccatatcaacgagaagatatttgggattatggagaagactttctctgtaagggaagacattgttaccggtttcgaagttacggatgaatt |
999 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48392767 |
tcaagatcttccatatcaacgagaagatatttgggattatggaggagactttctctgtaagggaagacattgttaccggtttcgaagttacggatgaatt |
48392668 |
T |
|
| Q |
1000 |
ctttgaatttttgaagaatggtgtggttggagatggtggcgtcggtttcgccgccgcggccgtcgtcccatgagtgtgcttggtcgctatagtatacgcc |
1099 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48392667 |
ctttgaatttttgaagaatggtgtggttggagatggcggcgtcggtttcgccgccgcggccgtcgtcccatgagtgtgcttggtcgctatagtatacgcc |
48392568 |
T |
|
| Q |
1100 |
tccttcgtcccaacctgacattgtttagatctctgatttgggattagggtttcggtgttt |
1159 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48392567 |
tccttcgtcccaacctgacattgtttagatctctgatttgggattagggtttcggtgttt |
48392508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 8e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 590 - 673
Target Start/End: Original strand, 36086035 - 36086118
Alignment:
| Q |
590 |
aatcaactcaccccaagcgatctcatggaaacggaatcctccttagaagtaagaagaatctgaacatcaccaggagcagcatct |
673 |
Q |
| |
|
|||| ||||||| |||| |||||||| ||||| |||| |||||||||||||||||||||| |||||| ||||||||||||||| |
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|
| T |
36086035 |
aatccactcaccacaagagatctcattgaaacagaatgttccttagaagtaagaagaatctaaacatcgccaggagcagcatct |
36086118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 19323496 - 19323449
Alignment:
| Q |
403 |
taatttgtgaaaatgacacaattgaattgaatcacatgtgtcagtgtc |
450 |
Q |
| |
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||||||| |||||||||| ||||||||| |||||||||||| |||||| |
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| T |
19323496 |
taatttgagaaaatgacataattgaatttaatcacatgtgtaagtgtc |
19323449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 9210875 - 9210826
Alignment:
| Q |
401 |
aataatttgtgaaaatgacacaattgaattgaatcacatgtgtcagtgtc |
450 |
Q |
| |
|
||||||||| |||||||||| |||| ||| ||||||||||||||| |||| |
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| T |
9210875 |
aataatttgagaaaatgacataattcaatggaatcacatgtgtcaatgtc |
9210826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 208
Target Start/End: Complemental strand, 31937550 - 31937420
Alignment:
| Q |
74 |
acaaactaaacctgaggaacatgatcacatgaacgtggaacaactgctccaccaagtcctggccgacacggaacttgcttccccttcttacaattcttac |
173 |
Q |
| |
|
||||||||||| |||| |||||| || ||||| |||||||| |||| |||||||| | |||||| || ||||||| |||||||| ||||||| | |
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| T |
31937550 |
acaaactaaacttgagaaacatg----cacgaacgaggaacaaccgctcgcccaagtccctgtcgacacataatttgcttctccttcttaaaattcttgc |
31937455 |
T |
|
| Q |
174 |
atatcaaggtcacatatgttgcttttgccttagtc |
208 |
Q |
| |
|
| |||| ||||||||||||||| |||| ||||||| |
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| T |
31937454 |
aaatcagggtcacatatgttgcctttgtcttagtc |
31937420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 401 - 449
Target Start/End: Complemental strand, 6284711 - 6284663
Alignment:
| Q |
401 |
aataatttgtgaaaatgacacaattgaattgaatcacatgtgtcagtgt |
449 |
Q |
| |
|
||||||||| |||||||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
6284711 |
aataatttgagaaaatgacataattgaatttaatcacatgtgttagtgt |
6284663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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