View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_11 (Length: 509)
Name: NF1999_low_11
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 288
Target Start/End: Original strand, 8326738 - 8326999
Alignment:
| Q |
14 |
gtttcataaatggtaaagttaaaagaaaaaactacgtcaaattccttgatgttcattttatatataagttttaaatataagattatggtaattttatata |
113 |
Q |
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| T |
8326738 |
gtttaataaatggtaaagttaaaagaaaaaactacgtcaaattccttgatgttcattttatatat-------------aagattatggtaattttatata |
8326824 |
T |
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| Q |
114 |
ttgcttgagttcaaaccatcacctttgagtaaatataaggtgcaaaatggaaatatgagtctattttacttctttttcttttgggttgtgctaacaagta |
213 |
Q |
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| T |
8326825 |
ttgcttgagttcaaaccatcacctttgagtaaatataaggtgcaaaattgaaatatgagtctattttacttctttttcttttgggttgtgctaacaagta |
8326924 |
T |
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| Q |
214 |
gtgataggttgaccattctatgtggcatattaacaataaacacctctatgtggtatgagaaattttgtctattaa |
288 |
Q |
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| T |
8326925 |
gtgataggttgaccattctatgtggcatattaataatatacacccctatgtggtatgagaaattttgtctattaa |
8326999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 361 - 493
Target Start/End: Original strand, 8327072 - 8327204
Alignment:
| Q |
361 |
cctcttaaccaataacctaaagacactctttaatattttcctctttttagtcatttataaataccaactcttttataagccaactatgggtttctctnnn |
460 |
Q |
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| T |
8327072 |
cctcttaaccaatgatctaaagacactctttaatattttcctctttttagtcatttataaataccaactcttttataacccaactatgggtttctctaaa |
8327171 |
T |
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| Q |
461 |
nnnngaactaaaaaattaactatgggttacatg |
493 |
Q |
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| T |
8327172 |
aaaagaactaaaaaattaactatgggttacatg |
8327204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 8325839 - 8325913
Alignment:
| Q |
121 |
agttcaaaccatcacctttgagtaaata--taaggtgcaaaatggaaatatgagtctattttacttctttttctt |
193 |
Q |
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| T |
8325839 |
agttcaaatcaccacctttgagtaaaaaaataaggtgcaaaattgaaatatgagtctattttacttctttttctt |
8325913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 8331690 - 8331755
Alignment:
| Q |
14 |
gtttcataaatggtaaagttaaaagaaaaaactacgtcaaattccttgatgttcattttatatata |
79 |
Q |
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| T |
8331690 |
gtttaataaataataaagttaaaagaaaaaactacatcaaattccttgatgttcaatttatatata |
8331755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 7510697 - 7510659
Alignment:
| Q |
121 |
agttcaaaccatcacctttgagtaaatataaggtgcaaa |
159 |
Q |
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| T |
7510697 |
agttcaaaccatcacatttgagtaaaaataaggtgcaaa |
7510659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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