View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_12 (Length: 489)
Name: NF1999_low_12
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 49 - 370
Target Start/End: Complemental strand, 15328707 - 15328387
Alignment:
| Q |
49 |
ggcttagagggtcaaaactcaaatctgatattaaaatgcctcaaatcctttctccacggcccatgtaggagaaaacaaacgtggatgcaatggaatgaaa |
148 |
Q |
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| T |
15328707 |
ggcttaaagggtcaaaactcaaatctgatattaaaatgcctcaaatcctttccccacagtccatgtaggaaaaaacaaacgtggatgcaatggaatgaaa |
15328608 |
T |
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| Q |
149 |
caattagagttccaagtccataactttaaagcccttgtattg-ttttcccctccaactatcttaatttagcattcatcatcaaacttctttgctacttgg |
247 |
Q |
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| T |
15328607 |
caattagagttccaagtccttaactttaaagcccttatattgtttttcccctccaactatcttaatttagcattcatcatcaaacttctttgctacttag |
15328508 |
T |
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| Q |
248 |
tatgaatgatatcatatgtgacaagacaaagcatgtaaagtgtttctcacctt-gattttctgtgatcttcaaatgttaccaattaccaaatatgagaaa |
346 |
Q |
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| T |
15328507 |
tatgaatgatatcatacgtgacaagacaaagcacgtaaagtgtttttcactttctaattgct-tca--gtcaaatgttaccaattaccaaatatgacaaa |
15328411 |
T |
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| Q |
347 |
catttacaaagtgatcttcaaaat |
370 |
Q |
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| T |
15328410 |
cattttcaaagtgatcttcaaaat |
15328387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 439 - 476
Target Start/End: Complemental strand, 15328318 - 15328281
Alignment:
| Q |
439 |
gtatgtaggcagtttgggtcattgttatgtgttgttga |
476 |
Q |
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| T |
15328318 |
gtatgtaggcagtttgggtcattgttatgtgttgttga |
15328281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 15328732 - 15328700
Alignment:
| Q |
11 |
tagaacaccaaattcatgatattaaggcttaaa |
43 |
Q |
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| T |
15328732 |
tagaacaccaaattcatgatgttaaggcttaaa |
15328700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 12655581 - 12655643
Alignment:
| Q |
12 |
agaacaccaaattcatgatattaaggcttaaatgaggggcttagagggtcaaaactcaaatctgat |
77 |
Q |
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| T |
12655581 |
agaacaccaaattcttgacattaaggcttaaatgaggggattcgagg---ataactcaaatctgat |
12655643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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