View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1999_low_15 (Length: 468)
Name: NF1999_low_15
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 451
Target Start/End: Original strand, 10821098 - 10821532
Alignment:
| Q |
17 |
ctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |
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| T |
10821098 |
ctaaagcctgttgttgacaagtacaaaaccttcttaggaagaccttggcaacaatattcaagagttatggtgatgaaaacttttatggacactttagtca |
10821197 |
T |
|
| Q |
117 |
gcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaa |
216 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
10821198 |
gccccctaggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacaacaaa |
10821297 |
T |
|
| Q |
217 |
cagggtgaaatggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtccaacatggttggctaaa |
316 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10821298 |
cagggtaaattggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtccaacatggttggctaaa |
10821397 |
T |
|
| Q |
317 |
actactgtgccatttacatctggtctttgatcatttgtattgtaattaaattcattgtaatttttgtaagaacatgagtcaatattctttaatttgtata |
416 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10821398 |
actactgtgccatttacatctggtctttgatcatttgtattgtaattaaattcattgtaatttttgtaagaacatgagtcaatattctttaatttgtata |
10821497 |
T |
|
| Q |
417 |
ttgagagagatattattattcatattcctttgtac |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
10821498 |
ttgagagagatattattattcatattcctttgtac |
10821532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 1629600 - 1629260
Alignment:
| Q |
17 |
ctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtga |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
1629600 |
ctaaaacctgttgttgacaagtacaaaaccttcttgggcagaccttggcaacaatattcaagagtaatggtgatgaaaacttttatggacactttagtga |
1629501 |
T |
|
| Q |
117 |
gcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaa |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1629500 |
gccccctaggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaa |
1629401 |
T |
|
| Q |
217 |
cagggtgaaatggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtccaacatggttggctaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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|
| T |
1629400 |
tagggtgaaatggcctggttatcatgtgatatcaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggaccaacatggttggctaca |
1629301 |
T |
|
| Q |
317 |
actactgtgccatttacatctggtctttgatcatttgtatt |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1629300 |
actactgtgccatttacatctggtctttgatcatttgtatt |
1629260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 1606302 - 1605967
Alignment:
| Q |
17 |
ctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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|
| T |
1606302 |
ctaaagcctgttgttgacaagtacaaaaccttcttgggcaggccttggcaacaatattcaagagttatggtgatgaaaactttcatggacactttagtaa |
1606203 |
T |
|
| Q |
117 |
gcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaa |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1606202 |
gccccctgggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaa |
1606103 |
T |
|
| Q |
217 |
cagggtgaaatggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtccaacatggttggctaaa |
316 |
Q |
| |
|
|| || |||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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|
| T |
1606102 |
tagagtaaaatggcctggttatcatgtgatatcaaaccctaatgaagcatcaaagtttacggttgctggactccttgctggaccaacatggttggctaca |
1606003 |
T |
|
| Q |
317 |
actactgtgccatttacatctggtctttgatcattt |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
1606002 |
actactgtgccatttacatctggtctttgatcattt |
1605967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 1623424 - 1623089
Alignment:
| Q |
17 |
ctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1623424 |
ctaaagcctgttgttgacaagtacaaaaccttcttgggaaggccttggcaacaattctcaagagttatggtgatgaaaacttttatggacactttagtga |
1623325 |
T |
|
| Q |
117 |
gcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaa |
216 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |||| |
|
|
| T |
1623324 |
gccccctaggttggtctccatggggtgacacagattttgctcaagatacattgtattatggagagtatgaaaactatggacctggttcatcaacaacaaa |
1623225 |
T |
|
| Q |
217 |
cagggtgaaatggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtccaacatggttggctaaa |
316 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
1623224 |
tagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagcatcaaagtttacggttgctggactccttgctggaccaacatggttggctaca |
1623125 |
T |
|
| Q |
317 |
actactgtgccatttacatctggtctttgatcattt |
352 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1623124 |
actaccgtgccatttacatctggtctttgatcattt |
1623089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 356 - 443
Target Start/End: Complemental strand, 1629211 - 1629124
Alignment:
| Q |
356 |
ttgtaattaaattcattgtaatttttgtaagaacatgagtcaatattctttaatttgtatattgagagagatattattattcatattc |
443 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
1629211 |
ttgtaattaaattcattgtaattcttaaaagaaaatgtgtcaatattctttaatttgtatattgagagagatataattattcatattc |
1629124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 18781118 - 18780787
Alignment:
| Q |
17 |
ctaaagcctgttgttgacaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18781118 |
ctaaagcctgttgttgacaagtacaaaaccttcttgggcaggccttggcaacaatattcaagagttatggtgatgaaaacttttatggacactttagtga |
18781019 |
T |
|
| Q |
117 |
gcccccttggttggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaa |
216 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18781018 |
gccccctaggttggtctccatggggtgacactgattttgctcaagacacattgtattatggcgagtatgagaattatggacctggttcatcaacagcaaa |
18780919 |
T |
|
| Q |
217 |
cagggtgaaatggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtccaacatggttggctaaa |
316 |
Q |
| |
|
|| || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| || |||| ||||||||| |||||| | |
|
|
| T |
18780918 |
tagagtaaaatggcctggttatcatgcgataacaaaccctaaggaagcatcaaagtttacggttgctggactcattactggaccaacatggctggctaca |
18780819 |
T |
|
| Q |
317 |
actactgtgccatttacatctggtctttgatc |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
18780818 |
actactgtgccatttacatctggtctttgatc |
18780787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 12802657 - 12802458
Alignment:
| Q |
44 |
accttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtctccatggggtg |
143 |
Q |
| |
|
||||||||||| |||| |||||| ||| || |||||| |||| |||||| | |||||||| | ||| || || || | ||||||||||||||||| | |
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|
| T |
12802657 |
accttcttgggccggccctggcaaagatactctagagttgtggtcatgaaatcattcatggataatttggtcagtccaatgggttggtctccatggggag |
12802558 |
T |
|
| Q |
144 |
acactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaacagggtgaaatggcctggttatcatgt |
243 |
Q |
| |
|
||| ||||||||||| ||| | | |||||||||||| |||| | ||| ||||| ||||||||| ||| || || | |||||||||||||||||| |
|
|
| T |
12802557 |
gtactaattttgctcaaagcactctattttatggagagtacaagaactttgggcctggatcatcaacaagaaatagagtaagatggcctggttatcatgt |
12802458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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