View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_17 (Length: 456)
Name: NF1999_low_17
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Complemental strand, 1028203 - 1027776
Alignment:
| Q |
16 |
ggaaataagttgtaaatagtttatgaaaaacatggtgtcggctgtttgcctgtgtctataagttctccccaagagtctcataaatgcttatgcaacacat |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
1028203 |
ggaaataagttgtaaatagtttatgaaaaacatgttgtcggctgtttgcctgtgtctataagctctccccaagagtctcataaatgcttatgcaacagat |
1028104 |
T |
|
| Q |
116 |
aaactcaaacaagtcaatccaagtagaccctttgtgttattattatgctctttcacaggcttatagtttcctaagcactacccatatcaacagtatttgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
1028103 |
aaactcaaacaagtcaatccaagtagaccctttgtgttattattatgctctttcccaggcttatagtttcctaagcactacccaaatcaacagtgtttgg |
1028004 |
T |
|
| Q |
216 |
acacacacataaaacacactgcaaagttgaataccgtaaaacattagg--nnnnnnnnnctaaagttttattcatttctttgtgagatgatgtagttgaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1028003 |
acacacacataaaacacactgcaaagttgaataccgtaaaacattaggaaaaaaaaaaactaaagttttattcatttctttgtgagatgatgtagttgaa |
1027904 |
T |
|
| Q |
314 |
tttttaattcttattatttttgcgatacatcatgctatgctttagactatgaattacaacaaagtgcaatgacaatattgcagcaccaatttgctggatc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1027903 |
tttttaattcttattatttttgcgatacatcatgctttgctttagactatgaattacaacaaagtgcaatgacaatattgcagcaccaatttgctggatg |
1027804 |
T |
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| Q |
414 |
atattcagaataactaggatatggtttt |
441 |
Q |
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| T |
1027803 |
atattcaggataactaggatatggtttt |
1027776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 1025563 - 1025525
Alignment:
| Q |
303 |
atgtagttgaatttttaattcttattatttttgcgatac |
341 |
Q |
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|||||| ||||||||||||||| |||||||||||||||| |
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| T |
1025563 |
atgtaggtgaatttttaattctgattatttttgcgatac |
1025525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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