View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_21 (Length: 422)
Name: NF1999_low_21
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 43531579 - 43531218
Alignment:
| Q |
1 |
gctaatggttccaattccacttgatgaagaagtgaagtctaaggttcgttcacgtaaaagacagtggggagcaagttggattgaacaatttttaatattg |
100 |
Q |
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| T |
43531579 |
gctaatggttccaattccacttgatgaagaagtgaagtctaaggttcgttcacgtaaaagacaatggggagcaagttggattgaacaatttttaatattg |
43531480 |
T |
|
| Q |
101 |
ttttccagaggattcaaagaacggagacatgactattttagctggttgagaatcacacaagttctttccactgctgtcatccttggattactatggtggc |
200 |
Q |
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| T |
43531479 |
ttttccagaggattcaaagaacggagacatgactattttagctggttgagaatcacacaagttctttccactgctgtcatccttggattactatggtggc |
43531380 |
T |
|
| Q |
201 |
aatcagatgctagcaacccaaagggtcttcaagatcaggtaagtggttaatgcatttcagctaagatcaaattatttggatagtatccaaatttgatatt |
300 |
Q |
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| T |
43531379 |
aatcagatgctagcaacccaaagggtcttcaagatcaggtaagtggttaatgcatttcagctaagatcgaattatttcgatagtatccaaatttgatatt |
43531280 |
T |
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| Q |
301 |
taaataaaatattattcattgatcagactttacttgtctcctaagtaaacttaccttgtattaaa |
365 |
Q |
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| T |
43531279 |
taaataaaa---tattcattgatcagactttacttgtctcctaagtaaacttaccttgtattaaa |
43531218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 55 - 242
Target Start/End: Original strand, 24128170 - 24128357
Alignment:
| Q |
55 |
taaaagacagtggggagcaagttggattgaacaatttttaatattgttttccagaggattcaaagaacggagacatgactattttagctggttgagaatc |
154 |
Q |
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| T |
24128170 |
taaaagacaatggggagcaagatgggatgaacaattttccatacttttttggagaggaatcaaggaaaggaggcatgactattttagctggttaagaatc |
24128269 |
T |
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| Q |
155 |
acacaagttctttccactgctgtcatccttggattactatggtggcaatcagatgctagcaacccaaagggtcttcaagatcaggtaa |
242 |
Q |
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||||||||| | |||||||| ||||| | |||||||| ||||||||||| ||||||| |||||||| | ||| ||||||||||||| |
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| T |
24128270 |
acacaagttttatccactgcaatcatcttaggattactctggtggcaatccgatgctaagaacccaaaagatctgcaagatcaggtaa |
24128357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 24145936 - 24146122
Alignment:
| Q |
56 |
aaaagacagtggggagcaagttggattgaacaatttttaatattgttttccagaggattcaaagaacggagacatgactattttagctggttgagaatca |
155 |
Q |
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| T |
24145936 |
aaaagacaatggggagcaagttgggatgaacaattttccatacttttttgcagaggaatcaaggaaaggaagcatgactactttagctggttaagaatca |
24146035 |
T |
|
| Q |
156 |
cacaagttctttccactgctgtcatccttggattactatggtggcaatcagatgctagcaacccaaagggtcttcaagatcaggtaa |
242 |
Q |
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| T |
24146036 |
cacaagttttatccactgcaatcatcttaggatcactctggtggcaatcagatgctgaaaacccaaaagatctgcaagatcaggtaa |
24146122 |
T |
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