View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_22 (Length: 413)
Name: NF1999_low_22
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 42540740 - 42541025
Alignment:
| Q |
1 |
tatacaatgattgttgccaattcgtttctcgaaaagattctgatctatccaagtgtgaccaagatcaaagaatttggtccaatacaccttgtgaatgaac |
100 |
Q |
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| T |
42540740 |
tatacaatgattgttgccaattcatttctcaaaaagattctgatctatccaagtgtgaccaaggtcaaagaatttggtccaatatgccctgtgaatgaac |
42540839 |
T |
|
| Q |
101 |
gggacggtccaagagccgagcaagcaaagcatgagttttaggcgtcaaaatattgtgtcaaaaaagtgccaatgtatttaatttagatgtaaatatataa |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42540840 |
gggactgtccaagagccgagcaagcaaagcatgagttttaggcgtcaaaatattgtgtcaaaaaagtgccaaagtatttaatttagatgtaaatatataa |
42540939 |
T |
|
| Q |
201 |
tatgacaaacgcaatataaacatttacataacttaattgattattgaaaaaactcaacattgttgatcataggttcaaatcttata |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42540940 |
tatgacaaacgcaatataaacatttacataacttaattgattattgaaaaaactcaacattgttgatcataggttcaaatcttata |
42541025 |
T |
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