View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_23 (Length: 408)
Name: NF1999_low_23
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 26642699 - 26643089
Alignment:
| Q |
17 |
gaacggttttcatgcagttgcagtaaaggtaacgaactatgagtgtatcgtgtt-----------------cgagatttagcttagttaatgcattttct |
99 |
Q |
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| T |
26642699 |
gaacggttttcatgcagttgcagtaaaggtaacgaaatatgcgtgtattgtgtttgtgataatgtgcaattcgagatttagcttagttaatgcattttct |
26642798 |
T |
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| Q |
100 |
gaaatggacttattagttttgaatataattctgtagttttcgtcacttttagtttttgaaatttgaatttcttgtgtttggatgcttaattagcaattac |
199 |
Q |
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| T |
26642799 |
gaaatggacttattagttttgaataaaattctgtagttttcgtcacttttagttt--gaaatttgaatttcttgtgtttggatgcttaattagcaattac |
26642896 |
T |
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| Q |
200 |
tgtttggtgaataggcatgtgaaaatgcattgaggtgcattggaaacagcgatgttcaaaagcttggaagagacgtgatttctgataatttgaaggctaa |
299 |
Q |
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| T |
26642897 |
tgtttggtgaataggcatgtgaaaatgcattgaggtgcattggaaacagcgatgttcaaaagcttggaagagacgtgatttctgataatttgaaggctaa |
26642996 |
T |
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| Q |
300 |
tactatcagtgagattactaggctcaggaacttttcactggcatcgattacttcacgttctggtatatcttcattcgtttgcattgaacattc |
392 |
Q |
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| T |
26642997 |
tactatcagtgagattactaggctcaggaacttttcactggcatcgattacttcacgttctggtatatcttcattcgtttgcattgaacattc |
26643089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 137 - 392
Target Start/End: Original strand, 26656303 - 26656558
Alignment:
| Q |
137 |
tttcgtcacttttagtttttgaaatttgaatttctt--gtgtttggatgcttaattagcaattactgtttggtgaataggcatgtgaaaatgcattgagg |
234 |
Q |
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| T |
26656303 |
tttcgtcacttttagttt--gaattttgagtttgttttgtgtttgaatgcataattagtaattattgtttggtgaataggcatgtgaaaatgcattgagg |
26656400 |
T |
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| Q |
235 |
tgcattggaaacagcgatgttcaaaagcttggaagagacgtgatttctgataatttgaaggctaatactatcagtgagattactaggctcaggaactttt |
334 |
Q |
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||||||||||| | | |||||||||||||||||||||||| |||| |||| ||||||||||||||| ||||||| |||||||||||||||||||| ||| |
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| T |
26656401 |
tgcattggaaataacaatgttcaaaagcttggaagagacgcgattcctgaaaatttgaaggctaatgctatcagcgagattactaggctcaggaattttg |
26656500 |
T |
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| Q |
335 |
cactggcatcgattacttcacgttctggtatatcttcattcgtttgcattgaacattc |
392 |
Q |
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| T |
26656501 |
cactgacatcaattacttcacgttctggtatatcttcattggtttgcattgaacattc |
26656558 |
T |
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