View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_24 (Length: 394)
Name: NF1999_low_24
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 48655567 - 48655227
Alignment:
| Q |
1 |
gtttttggagtgaatcttcaatgatttgatagtttgttggataaatgtctacgtctgaga-----gactctgttagggtgatttgaaagtggaaatagta |
95 |
Q |
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| T |
48655567 |
gtttttggagtgaatcttcaatgatttgataatttgttggataaatgtctacgtctgagtctatcgactctgttagggtgatttgaaagtggaaatagta |
48655468 |
T |
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| Q |
96 |
gatgagtgcttatgattataatgtttttgtagttgttcaactataatttcgaaaaaa-tatttagtacttaaaaaagttataattgttcaacttttattt |
194 |
Q |
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| T |
48655467 |
gatgagtgcttatggttataatgtttttgtagttgttcaactataatttcgaaaaaaatgtttagtacttaaaaaagttataattgttcaacttt-attt |
48655369 |
T |
|
| Q |
195 |
cctaaaataatttattttttaat-aagtattttctgcacacaactgcggagaataaactattgattcatatttcgaatagaatcataatgaatgattaaa |
293 |
Q |
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| T |
48655368 |
cctaaaataatttattttttaatcaagtat---ctgcacacaactgcggagaataaactattgattcagatttcgaatagaatcataatgaatgacaaaa |
48655272 |
T |
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| Q |
294 |
tttaaaatttaatactattgaatgttgaaaactcacatcctctct |
338 |
Q |
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| T |
48655271 |
tttaaaatttaatactattgaatgttgaaaactcacatcctctct |
48655227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 14717434 - 14717382
Alignment:
| Q |
334 |
tctctttttgctttctctcttgtgagcagtcactgaaactctaatttcttctc |
386 |
Q |
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| T |
14717434 |
tctcttttccctttctctcttgtgagccgtcaccaaaactctagtttcttctc |
14717382 |
T |
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