View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_27 (Length: 384)
Name: NF1999_low_27
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 5140559 - 5140912
Alignment:
| Q |
13 |
acctgtggaaaacaacaacaaaatgacaccgggtgatgtagtgtctagccgtctataacacacttaaactaaaatcaccataataaaattaacacctcat |
112 |
Q |
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| T |
5140559 |
acctgtggaaaacaacaacaaaatgacaccgggtgatgtagtgtctagccgtctataacacacttaaactaaaatcaccataatcaaattaacacctcat |
5140658 |
T |
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| Q |
113 |
gcataatcacataaactatacacaaaatgtatcaaataatgagggtacaacatctggtaaacctagcaaatcagttgtcttttacacaaaccaacgacga |
212 |
Q |
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| T |
5140659 |
acataatcacataaactatacacaaaatgcatcaaataatgaacatacaacatttggtaaacctagcaaatcagttgtcttttacacagaccaactacga |
5140758 |
T |
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| Q |
213 |
gtgaagaatatcatat-aaaaaacaagttttaaattcatttctcaccatactaaatcatatatcaatattatgattgatgaggtttgttccaaaaatgat |
311 |
Q |
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| T |
5140759 |
gtgaagaatatcatataaaaaaacaagttttaaactcatttctcaccatactaaatcatatatcaatattatgattgatgaggtttgttccaaaaatgat |
5140858 |
T |
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| Q |
312 |
ctatctaaccaaaaccaccatacaatccacaaatgaatgaatttatatgtagag |
365 |
Q |
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| T |
5140859 |
ctatctaaccaaaacaaccatacaatccacaaatgaatgaatttatatgtagag |
5140912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 118 - 358
Target Start/End: Complemental strand, 38921490 - 38921250
Alignment:
| Q |
118 |
atcacataaactatacacaaaatgtatcaaataatgagggtacaacatctggtaaacctagcaaat-cagttgtcttttacacaaaccaacgacgagtga |
216 |
Q |
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|||||||||||||||||| ||||| |||||||||||| |||||||||| | |||||| | ||| || ||| |||| |||||||||| |||||||| |
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| T |
38921490 |
atcacataaactatacacgaaatgcatcaaataatgaatgtacaacatccgataaacccaaaaaaagcatatgttctttatacaaaccaacaacgagtga |
38921391 |
T |
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| Q |
217 |
agaatatcatataaaaaacaagttttaaattcatttctcaccatactaaatcatatatcaatattatgattgatgaggtttgttccaaaaatgatctatc |
316 |
Q |
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|||||| |||||||||| |||| ||||||||||||||| | || |||||||| ||||||||||||| ||| | | |||||||| || ||||||||||| |
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| T |
38921390 |
agaataacatataaaaa-caaggtttaaattcatttcttaacacactaaatcggatatcaatattatcattttttatgtttgttctaataatgatctatc |
38921292 |
T |
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| Q |
317 |
taaccaaaaccaccatacaatccacaaatgaatgaatttata |
358 |
Q |
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| T |
38921291 |
taaccaaaaccaccacacaatacacaaatgaatgaatttata |
38921250 |
T |
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