View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_28 (Length: 378)
Name: NF1999_low_28
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 318
Target Start/End: Original strand, 8347446 - 8347769
Alignment:
| Q |
5 |
ccaacttcccttgatttatgctaaatccttgtttataatctgctgctttcatttccgggaaggtttcgtgataaattttgtctataaatatagcacttat |
104 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8347446 |
ccaactttccttgatttatgctaaatccttgtttataatctgctgctttcattttcgggaaggtttcgtgataaattttgtctatgaatatagcacttat |
8347545 |
T |
|
| Q |
105 |
tctctaataggattattcttatacatcaaaattttcttcccgaggacatagcgaagcctattcctcaatacaa----------nnnnnnnnnnnnacttc |
194 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8347546 |
tctctaataggtttattcttatatatcaaaattttcttcccgaggacatagcgaagcctattcctcaatacaatttttattttttacctccatttacttc |
8347645 |
T |
|
| Q |
195 |
ccatcttcccttgatttctgctaaatccttatttataattaattcgctgctttcatttttggaaaggtttcgtgataaattttgtcgctgaatatagcac |
294 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8347646 |
ccatcttcccttgatttctgctaaatccttgtttataattaattcgctgctttcatttttggaaaggtttcgtgataaattttgtcgctgaatatagcac |
8347745 |
T |
|
| Q |
295 |
ttttcattttttgttaaccttttc |
318 |
Q |
| |
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|||||||||||| ||||||||||| |
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| T |
8347746 |
ttttcattttttattaaccttttc |
8347769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 8347333 - 8347232
Alignment:
| Q |
1 |
tttcccaacttcccttgatttatgctaaatccttgtttataatctgctgctttcatttccgggaaggtttcgtgataaattttgtctataaatatagcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | |||||||||| |
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| T |
8347333 |
tttcccaacttcccttgatttatgctaaatccttgtttataattcgctgctttcatttttgggaaggtttcgtgataaattttgtcgttcaatatagcac |
8347234 |
T |
|
| Q |
101 |
tt |
102 |
Q |
| |
|
|| |
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|
| T |
8347233 |
tt |
8347232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 192 - 296
Target Start/End: Complemental strand, 8347332 - 8347232
Alignment:
| Q |
192 |
ttcccatcttcccttgatttctgctaaatccttatttataattaattcgctgctttcatttttggaaaggtttcgtgataaattttgtcgctgaatatag |
291 |
Q |
| |
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|||||| ||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||| | ||||||| |
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| T |
8347332 |
ttcccaacttcccttgatttatgctaaatccttgtttataatt----cgctgctttcatttttgggaaggtttcgtgataaattttgtcgttcaatatag |
8347237 |
T |
|
| Q |
292 |
cactt |
296 |
Q |
| |
|
||||| |
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|
| T |
8347236 |
cactt |
8347232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 8347643 - 8347747
Alignment:
| Q |
2 |
ttcccaacttcccttgatttatgctaaatccttgtttataatct----gctgctttcatttccgggaaggtttcgtgataaattttgtctataaatatag |
97 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||| | ||||||| |
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| T |
8347643 |
ttcccatcttcccttgatttctgctaaatccttgtttataattaattcgctgctttcatttttggaaaggtttcgtgataaattttgtcgctgaatatag |
8347742 |
T |
|
| Q |
98 |
cactt |
102 |
Q |
| |
|
||||| |
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|
| T |
8347743 |
cactt |
8347747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 296
Target Start/End: Original strand, 8347441 - 8347543
Alignment:
| Q |
190 |
acttcccatcttcccttgatttctgctaaatccttatttataattaattcgctgctttcatttttggaaaggtttcgtgataaattttgtcgctgaatat |
289 |
Q |
| |
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|||| ||| ||| ||||||||| |||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||| |
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| T |
8347441 |
actttccaactttccttgatttatgctaaatccttgtttataatct----gctgctttcattttcgggaaggtttcgtgataaattttgtctatgaatat |
8347536 |
T |
|
| Q |
290 |
agcactt |
296 |
Q |
| |
|
||||||| |
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|
| T |
8347537 |
agcactt |
8347543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 30954425 - 30954321
Alignment:
| Q |
199 |
cttcccttgatttctgctaaatccttatttataattaattcgctgctttcatttttggaaaggtttcgtgataaattttgtcgctgaatatagcactttt |
298 |
Q |
| |
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||||||||||||||||| ||||||| ||| || ||||| | |||||||||||| || ||| || |||||||| |||| |||||||||||||||||| | |
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| T |
30954425 |
cttcccttgatttctgccaaatcctccttt-ta--taatttgttgctttcattttcgggaagtttccgtgataacttttttcgctgaatatagcacttat |
30954329 |
T |
|
| Q |
299 |
catttttt |
306 |
Q |
| |
|
||| |||| |
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|
| T |
30954328 |
catatttt |
30954321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 30954428 - 30954329
Alignment:
| Q |
6 |
caacttcccttgatttatgctaaatccttgttt-ataatctgctgctttcatttccgggaaggtttcgtgataaattttgtctataaatatagcacttat |
104 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||| ||||| || ||||||||||| ||||||| || |||||||| |||| || | |||||||||||||| |
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| T |
30954428 |
caacttcccttgatttctgccaaatcctccttttataatttgttgctttcattttcgggaagtttccgtgataacttttttcgctgaatatagcacttat |
30954329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 30954499 - 30954465
Alignment:
| Q |
136 |
ttttcttcccgaggacatagcgaagcctattcctc |
170 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
30954499 |
ttttcttcacgaggacatagcgaagcctattcctc |
30954465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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