View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1999_low_30 (Length: 366)

Name: NF1999_low_30
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1999_low_30
NF1999_low_30
[»] chr1 (5 HSPs)
chr1 (144-199)||(45691579-45691634)
chr1 (150-193)||(28165109-28165152)
chr1 (153-199)||(51120694-51120740)
chr1 (147-196)||(36437180-36437229)
chr1 (144-196)||(32715807-32715859)
[»] chr7 (1 HSPs)
chr7 (146-196)||(46101155-46101205)
[»] chr4 (1 HSPs)
chr4 (1-32)||(25735584-25735615)
[»] chr2 (1 HSPs)
chr2 (144-199)||(13027917-13027972)
[»] chr8 (1 HSPs)
chr8 (158-200)||(30105596-30105638)
[»] chr6 (4 HSPs)
chr6 (142-196)||(2950135-2950189)
chr6 (158-196)||(5428831-5428869)
chr6 (158-196)||(24789915-24789953)
chr6 (147-196)||(606598-606647)
[»] scaffold1809 (1 HSPs)
scaffold1809 (147-196)||(478-527)
[»] chr5 (2 HSPs)
chr5 (147-196)||(3629190-3629239)
chr5 (144-196)||(19090223-19090275)
[»] chr3 (1 HSPs)
chr3 (147-196)||(46918444-46918493)


Alignment Details
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 45691634 - 45691579
Alignment:
Q  144 aatttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaataat 199  Q
    ||||| ||| ||| |||||||||||||||| ||||||||||||||||| |||||||    
T  45691634 aatttttatgagggtatatttgtaaaaatattcaaaaaattacaacaactaataat 45691579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 28165152 - 28165109
Alignment:
Q  150 tataaggctatatttgtaaaaatagtcaaaaaattacaacaatt 193  Q
    ||||||| |||||||||||||||| |||||||||||||| ||||    
T  28165152 tataagggtatatttgtaaaaatattcaaaaaattacaataatt 28165109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 51120740 - 51120694
Alignment:
Q  153 aaggctatatttgtaaaaatagtcaaaaaattacaacaattaataat 199  Q
    |||| |||||||||||||||| | ||| |||||||||||||||||||    
T  51120740 aaggttatatttgtaaaaatatttaaagaattacaacaattaataat 51120694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 36437229 - 36437180
Alignment:
Q  147 ttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 196  Q
    |||||||||| |||||||||||||||  | ||||| ||||||||||||||    
T  36437229 ttctataagggtatatttgtaaaaatgtttaaaaagttacaacaattaat 36437180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 32715807 - 32715859
Alignment:
Q  144 aatttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 196  Q
    ||||| ||| ||| |||||||||||||| | ||||||||||||||||| ||||    
T  32715807 aatttttatgaggatatatttgtaaaaacattcaaaaaattacaacaactaat 32715859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 46101205 - 46101155
Alignment:
Q  146 tttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 196  Q
    ||||||||||| |||||||||||||||| | |||||| |||||||||||||    
T  46101205 tttctataagggtatatttgtaaaaatatttaaaaaactacaacaattaat 46101155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 25735584 - 25735615
Alignment:
Q  1 cttcatggaactgcagaaaatttccactacgt 32  Q
    ||||||||||||||||||||||||||||||||    
T  25735584 cttcatggaactgcagaaaatttccactacgt 25735615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 13027917 - 13027972
Alignment:
Q  144 aatttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaataat 199  Q
    ||||||||| ||| |||||||||||||||| ||||||| || ||||||| ||||||    
T  13027917 aatttctatgaggatatatttgtaaaaatattcaaaaagttgcaacaatgaataat 13027972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 30105638 - 30105596
Alignment:
Q  158 tatatttgtaaaaatagtcaaaaaattacaacaattaataata 200  Q
    |||||||||||||||  | ||||||||||||||||||||||||    
T  30105638 tatatttgtaaaaatgtttaaaaaattacaacaattaataata 30105596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 2950189 - 2950135
Alignment:
Q  142 acaatttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 196  Q
    ||||||| ||| ||| |||||||||||||||| |||||||||||||  |||||||    
T  2950189 acaatttttatcaggatatatttgtaaaaatattcaaaaaattacattaattaat 2950135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 5428831 - 5428869
Alignment:
Q  158 tatatttgtaaaaatagtcaaaaaattacaacaattaat 196  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  5428831 tatatttgtaaaaatatttaaaaaattacaacaattaat 5428869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 24789953 - 24789915
Alignment:
Q  158 tatatttgtaaaaatagtcaaaaaattacaacaattaat 196  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  24789953 tatatttgtaaaaatatttaaaaaattacaacaattaat 24789915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 606647 - 606598
Alignment:
Q  147 ttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 196  Q
    |||||||||| |||||||||||||||  | ||||| ||||||||||||||    
T  606647 ttctataagggtatatttgtaaaaatgtttaaaaagttacaacaattaat 606598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 527 - 478
Alignment:
Q  147 ttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 196  Q
    |||||||||| |||||||||||||||  | ||||| ||||||||||||||    
T  527 ttctataagggtatatttgtaaaaatctttaaaaagttacaacaattaat 478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 3629239 - 3629190
Alignment:
Q  147 ttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 196  Q
    |||||||||| |||||||||||||||  | ||||| ||||||||||||||    
T  3629239 ttctataaggttatatttgtaaaaatgtttaaaaagttacaacaattaat 3629190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 19090275 - 19090223
Alignment:
Q  144 aatttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 196  Q
    ||||||| | ||| ||||||| |||||||| | ||||||||||||||||||||    
T  19090275 aatttctttgaggatatatttataaaaatattaaaaaaattacaacaattaat 19090223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 46918493 - 46918444
Alignment:
Q  147 ttctataaggctatatttgtaaaaatagtcaaaaaattacaacaattaat 196  Q
    |||||||||| |||||||||||||||  | ||||| ||||||||||||||    
T  46918493 ttctataagggtatatttgtaaaaatgtttaaaaatttacaacaattaat 46918444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University