View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1999_low_33 (Length: 350)
Name: NF1999_low_33
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_33 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 31 - 350
Target Start/End: Original strand, 38831182 - 38831503
Alignment:
| Q |
31 |
ttatacaaaatatattttggcatttattcaaaaatattctacccgtgaatgattcaatttttgttgtctcccacctaatatatgctgcctatacaattcc |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38831182 |
ttatacaaaatatattttggcatttattcaaaaatattctacccgtgaatgattcaatttttgttgtctcccacctaatatatgctgcctatacaattcc |
38831281 |
T |
|
| Q |
131 |
ttggccacaacaagctaaacaacaacaaagagtcacgagatagatatcaataccatattcaccatttgtggacttactatttttaattcatgaatttccc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38831282 |
ttggccacaacaagctaaacaacaacaaagagtcacgagatagatatcaataccatattcaccatttgtggacttactatttttaattcatgaatttccc |
38831381 |
T |
|
| Q |
231 |
aaacatatatacgtgttcatttttgagtggaaatattaagttc--nnnnnnnnnnnnnnnnnncaaaatagtacgtacaagcaagtatttgtcataacaa |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38831382 |
aaacatatatacgtgttcatttttgagtggaaatattaagttcatatatatatatatatatatcaaaatagtacgtacaagcaagtatttgtcataacaa |
38831481 |
T |
|
| Q |
329 |
tatgagtgtattataggataat |
350 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38831482 |
tatgagtgtattataggataat |
38831503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University