View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_35 (Length: 341)
Name: NF1999_low_35
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 34 - 324
Target Start/End: Original strand, 3221425 - 3221717
Alignment:
| Q |
34 |
gaggacccaaggagcttcattggagagag--ctgtatccaggaccggagtttgcagcagagcaactaacaaaaacaccattttgagtagcagcaaaagca |
131 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3221425 |
gaggacccaaggagcttcattggagagagtgctgtatccaggaccggagtttgcagcagagcaactaacaaaaacaccattttgagtagcagcaaaagca |
3221524 |
T |
|
| Q |
132 |
ccaattgcaattgggtcttcaaagaatggaagagaacctaaacctagtgaaagtgaaagaacatctacaccatcttcaaaagcaatatccattgcagcta |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3221525 |
ccaattgcaattgggtcttcaaagaatggaagagaacctaaacctagtgaaagtgaaagaacatctacaccatcttcaatagcaatatccattgcagcta |
3221624 |
T |
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| Q |
232 |
agatagaactttcagcgcatggaatgttatcagtacaaactttgtacattgctatgtgagcattaggtgccataccagctgcaacacctttag |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3221625 |
agatagaactttcagcgcatggaatgttatcagtacaaactttgtacattgctatgtgagcattaggtgccataccagctgctacacctttag |
3221717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 34 - 324
Target Start/End: Original strand, 3231658 - 3231950
Alignment:
| Q |
34 |
gaggacccaaggagcttcattggagagag--ctgtatccaggaccggagtttgcagcagagcaactaacaaaaacaccattttgagtagcagcaaaagca |
131 |
Q |
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||||| |||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3231658 |
gaggatccaaggagcttcattggaaagagtgctgtatccaggaccagagtttgcagcagagcaactaacaaaaacaccattttgagtagcagcaaaagca |
3231757 |
T |
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| Q |
132 |
ccaattgcaattgggtcttcaaagaatggaagagaacctaaacctagtgaaagtgaaagaacatctacaccatcttcaaaagcaatatccattgcagcta |
231 |
Q |
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| T |
3231758 |
ccaattgcaattgggtcttcaaagaatggaagagaacctaaaccaagtgaaagtgaaagaacatctacaccatcttcaatagctatatctattgcagcta |
3231857 |
T |
|
| Q |
232 |
agatagaactttcagcgcatggaatgttatcagtacaaactttgtacattgctatgtgagcattaggtgccataccagctgcaacacctttag |
324 |
Q |
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||| |||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3231858 |
agacagaactttcaaagcatcgaatgttatcatcacaaactttgtacattgctatgtgagcattaggtgccataccagctgctacacctttag |
3231950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 34 - 324
Target Start/End: Original strand, 3226407 - 3226699
Alignment:
| Q |
34 |
gaggacccaaggagcttcattggagagag--ctgtatccaggaccggagtttgcagcagagcaactaacaaaaacaccattttgagtagcagcaaaagca |
131 |
Q |
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||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3226407 |
gaggatccaaggagcttcattggagagagtgctatatccaggaccagagtttgcagcagagcaactaacaaaaacaccattttgagttgcagcaaaagca |
3226506 |
T |
|
| Q |
132 |
ccaattgcaattgggtcttcaaagaatggaagagaacctaaacctagtgaaagtgaaagaacatctacaccatcttcaaaagcaatatccattgcagcta |
231 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
3226507 |
ccaattgcaattgggtcttcaaagaatggaagggaacctaaaccaagtgaaagtgaaagaacatctacaccatcttcgatagcaatatccattgcagcta |
3226606 |
T |
|
| Q |
232 |
agatagaactttcagcgcatggaatgttatcagtacaaactttgtacattgctatgtgagcattaggtgccataccagctgcaacacctttag |
324 |
Q |
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|||||| |||||||| |||| ||| || ||| |||| |||||||| ||||||| ||| |||||||||||||| || ||||| |||||||||| |
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| T |
3226607 |
agatagcactttcagtgcatccaattttgtcattacacactttgtatattgctaagtgggcattaggtgccattcctgctgctacacctttag |
3226699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 34 - 324
Target Start/End: Original strand, 3240457 - 3240749
Alignment:
| Q |
34 |
gaggacccaaggagcttcattggagagag--ctgtatccaggaccggagtttgcagcagagcaactaacaaaaacaccattttgagtagcagcaaaagca |
131 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| |||| || |||||||| |||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
3240457 |
gaggatccaaggagcttcattggagagagtgctgtattcagggccagagtttgcggcagagcagctaacaaaaataccattttgagtagcagcaaaagca |
3240556 |
T |
|
| Q |
132 |
ccaattgcaattgggtcttcaaagaatggaagagaacctaaacctagtgaaagtgaaagaacatctacaccatcttcaaaagcaatatccattgcagcta |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
3240557 |
ccaattgcaattgggtcttcaaagaatggaagagaacctaaaccaagtgaaagtgacagaacatctacaccatcttcaatagctatatccattgcagcta |
3240656 |
T |
|
| Q |
232 |
agatagaactttcagcgcatggaatgttatcagtacaaactttgtacattgctatgtgagcattaggtgccataccagctgcaacacctttag |
324 |
Q |
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|||||| |||||| | |||| || |||||| | || |||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
3240657 |
agatagcactttcggggcattctattttatcattgcacactttgtatattgctaagtgagcattaggtgccataccagctgctacacctttag |
3240749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 34 - 324
Target Start/End: Complemental strand, 3178383 - 3178091
Alignment:
| Q |
34 |
gaggacccaaggagcttcattggagagag--ctgtatccaggaccggagtttgcagcagagcaactaacaaaaacaccattttgagtagcagcaaaagca |
131 |
Q |
| |
|
||||| ||||||||||||||| ||||||| |||||| |||| || |||||| | |||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
3178383 |
gaggatccaaggagcttcattcgagagagtgctgtattcagggccagagtttccggcagagcagctaacaaaaacaccatttttagtagcagcaaaagca |
3178284 |
T |
|
| Q |
132 |
ccaattgcaattgggtcttcaaagaatggaagagaacctaaacctagtgaaagtgaaagaacatctacaccatcttcaaaagcaatatccattgcagcta |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
3178283 |
ccaattgcaattgggtcttcaaagaatggaagagaacctaaaccaagtgaaagtgacagaacatctacaccatcttcaatagctatatccattgcagcta |
3178184 |
T |
|
| Q |
232 |
agatagaactttcagcgcatggaatgttatcagtacaaactttgtacattgctatgtgagcattaggtgccataccagctgcaacacctttag |
324 |
Q |
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|||||| |||||| | |||| || |||||| | || |||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
3178183 |
agatagcactttcggggcattctattttatcattgcacactttgtatattgctaagtgagcattaggtgccataccagctgctacacctttag |
3178091 |
T |
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