View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_39 (Length: 316)
Name: NF1999_low_39
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 33 - 308
Target Start/End: Complemental strand, 1629211 - 1628933
Alignment:
| Q |
33 |
ttgtaattaaattcattgtaatttttgtaagaacatgagtcaatattctttaatttgtatattgagagagatat---tattcatattctttaattttgta |
129 |
Q |
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| T |
1629211 |
ttgtaattaaattcattgtaattcttaaaagaaaatgtgtcaatattctttaatttgtatattgagagagatataattattcatattctttaattttgta |
1629112 |
T |
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| Q |
130 |
ctacttaacaagttcaactttgatgatccgacggatctatgtttaaaaagtcaatatgtcagaaactaagtaacaaataagcatcctgtcctttaaaaaa |
229 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |
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| T |
1629111 |
ctactttacaagttcaactttgatgatccagcggatctatgtttaaaaagtcaatatgtcagaaactaagtaacaaataagcatcttgtcattttaaaaa |
1629012 |
T |
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| Q |
230 |
tatatataaaattaagtcctatgcgcgaggtgcatgaggccatgcatcgcctttggcagttgctcatctccttcatctc |
308 |
Q |
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| T |
1629011 |
tatatataaaattaagtcctatgcgcgaggtgcatgaggccatgcatcgcctgtggcagttgctcatctccttgatctc |
1628933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 10821405 - 10821701
Alignment:
| Q |
1 |
tgccatttacatctggtctttgatcatttgtattgtaattaaattcattgtaatttttgtaagaacatgagtcaatattctttaatttgtatattgagag |
100 |
Q |
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| T |
10821405 |
tgccatttacatctggtctttgatcatttgtattgtaattaaattcattgtaatttttgtaagaacatgagtcaatattctttaatttgtatattgagag |
10821504 |
T |
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| Q |
101 |
aga---tattattcatattctttaattttgtactacttaacaagttcaactttgatgatccgacggatctatgtttaaaaagtcaatatgtcagaaacta |
197 |
Q |
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| T |
10821505 |
agatattattattcatattc-----ctttgtacaactttacaagttcacctttgatgattcaactgatatatgtttaaaaagtcaatatatcataaacta |
10821599 |
T |
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| Q |
198 |
agtaacaaataagcatcctgtcctttaaaaaatatatataaaattaagtcctatgcgcgaggtgcatgaggccatgcatcgcctttggcagttgctcatc |
297 |
Q |
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| T |
10821600 |
tgtaacaaataagaatcttgtaattttaaaaa-aaaaatagaa--aagtcctatgcgcgaggcgcatgaggccatgcgtcgcgcgtgacagttgctcatc |
10821696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 1629293 - 1629260
Alignment:
| Q |
1 |
tgccatttacatctggtctttgatcatttgtatt |
34 |
Q |
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| T |
1629293 |
tgccatttacatctggtctttgatcatttgtatt |
1629260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 1605995 - 1605967
Alignment:
| Q |
1 |
tgccatttacatctggtctttgatcattt |
29 |
Q |
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| T |
1605995 |
tgccatttacatctggtctttgatcattt |
1605967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 1623117 - 1623089
Alignment:
| Q |
1 |
tgccatttacatctggtctttgatcattt |
29 |
Q |
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| T |
1623117 |
tgccatttacatctggtctttgatcattt |
1623089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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