View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_4 (Length: 628)
Name: NF1999_low_4
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 12 - 608
Target Start/End: Original strand, 23665964 - 23666563
Alignment:
| Q |
12 |
aaagggaaaaagagtctacggtcaaaataagtcttaactttttctactttatggtcaataatatttctcaattcatattatctctctgccacttcggact |
111 |
Q |
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| T |
23665964 |
aaagggaaaaagagtctacggtcaaaataagtcttaactgtttctactttatggtcaataatatttctcaattcatattctctctctgcctcttcggact |
23666063 |
T |
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| Q |
112 |
ttggagttattgttccatttgaattagattgtgcaaaacacacgccatacactaattatcacaaactttatcatccaaattccaagtgcaagtcataatc |
211 |
Q |
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| T |
23666064 |
ttggagttattgttccatttgaattagattgtgcaaaacacacgccatacactaattatcacaaactttatcatccaaattccaagtgcaagtcataatc |
23666163 |
T |
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| Q |
212 |
tgtggaacaatggacatacatactttagatgagaatatttaggtctcttttgttattagatgagaatattcaggtctttctggttt---aagatgttgag |
308 |
Q |
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| T |
23666164 |
tgtggaacaatggacatacatactttagatgagaatatttaggtctcttttg---ttagatgagattattcaggtctttctggtttaaaaagatgttgag |
23666260 |
T |
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| Q |
309 |
tttaaatcaagttttgaaaatgcgataaatttttt---gaagagttttgttgttcaccttggtcctatccagattgagaggttagagaagcaaccagcat |
405 |
Q |
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| T |
23666261 |
tttaaatcaagttttgaaaatgcgacaaaacttttgaagaagagttttgtcgttcaccttggtcctatccagattgagaggttagagaagcaaccagcat |
23666360 |
T |
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| Q |
406 |
aaaagtatatgagaaactaaaattgaaagacaacggaatatgttctccggtcttgtagttcggttaatgatgtatacgtctgtgattattgagcggttat |
505 |
Q |
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| T |
23666361 |
aaaagtatatgagaaactaaaattgaaagacaacaaaatatgttctttggtcttgtagttcggttaatggtgtatacgtctgtgattattgagcggttat |
23666460 |
T |
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| Q |
506 |
aattttgtttatttctacgatgaattagggtttaagtgttacgaccaatacgtagtacttcaattcagtttgataatccatatcggttgcacactaaagc |
605 |
Q |
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| T |
23666461 |
aattttgtttatttctacgatgaattagggtttaagtgttacgaccaatacatagtacttcgattcagtttgataatccatatcggttgcacactaaagc |
23666560 |
T |
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