View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1999_low_42 (Length: 306)
Name: NF1999_low_42
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_42 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
| [»] scaffold1643 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 6141125 - 6141415
Alignment:
| Q |
1 |
ctcatgaggtttctattcggttgacgatccgccaagacggagacacgttcttcagtttctgagccatccatttctctccattcatcatacgacaaactta |
100 |
Q |
| |
|
||||||||||||||||| |||||| || || ||||||| ||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6141125 |
ctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgagccatccatttctctccattcatcgtacgacaaactta |
6141224 |
T |
|
| Q |
101 |
attcttctaaatttttcttatctttcaaatttgctgccatagcatctgctggatcggccacatttttcaaccctgaaatttgaagccttcctttaaggtg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6141225 |
attcttctaaatgtttcttatctttcaaatttgctgccatagcatctgctagatcagaaacatttttcaaccctgaaatttgaagccttcctttaaggtg |
6141324 |
T |
|
| Q |
201 |
gttgagttctgccaactgcttaatatcaaatccacgctgctctcccacaacaaaatcagtcagtatctcaagattgattaaccctcttatc |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||| |||| |||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
6141325 |
gttgagttctgccaactgcttaatatcaaatccatgttgctctcctacaataaaatcagtcagcatctcaggattgattaaccctcttatc |
6141415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 6258041 - 6258331
Alignment:
| Q |
1 |
ctcatgaggtttctattcggttgacgatccgccaagacggagacacgttcttcagtttctgagccatccatttctctccattcatcatacgacaaactta |
100 |
Q |
| |
|
||||||||||||||||| |||||| || || ||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6258041 |
ctcatgaggtttctattaggttgaagagcctccaagaccgatacacgtgcttcagtttctgagccatccatttctctccattcatcatacgacaaactta |
6258140 |
T |
|
| Q |
101 |
attcttctaaatttttcttatctttcaaatttgctgccatagcatctgctggatcggccacatttttcaaccctgaaatttgaagccttcctttaaggtg |
200 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6258141 |
attcttctaaatgtttcttctctttcaaatttgctgccatagcaactgctggatccgccacgtttttcaaccctgaaattcgaagccttcctttaaggtg |
6258240 |
T |
|
| Q |
201 |
gttgagttctgccaactgcttaatatcaaatccacgctgctctcccacaacaaaatcagtcagtatctcaagattgattaaccctcttatc |
291 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
6258241 |
gttgagttctgccaactgcttaatatcatatccatgttgctcttccacaacaaaatcagtcagcatctcaagattgattaattctcttatc |
6258331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 13271743 - 13271463
Alignment:
| Q |
1 |
ctcatgaggtttctattcggttgacgatccgccaagacggagacacgttcttcagtttctgagccatccatttctctccattcatcatacgacaaactta |
100 |
Q |
| |
|
|||||||||| |||||| |||||| || | ||||||| ||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13271743 |
ctcatgaggtgtctatttggttgaagagcttccaagaccgagacacgtgcttcagttactaagccatccatttctctccattcatcatacgacaaactta |
13271644 |
T |
|
| Q |
101 |
attcttctaaatttttcttatctttcaaatttgctgccatagcatctgctggatcggccacatttttcaaccctgaaatttgaagccttcctttaaggtg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13271643 |
attcttctaaatgtttcttatctttcaaatttgctgccatagcatctgctggatgagccacatttttcaatcctgaaatttgaagccttcctttaaggtg |
13271544 |
T |
|
| Q |
201 |
gttgagttctgccaactgcttaatatcaaatccacgctgctctcccacaacaaaatcagtcagtatctcaagattgattaa |
281 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13271543 |
gttgagttctgccaactgcttaatatcatatccatgttgctctcccacaacaaaatcagtcagcatctcaagattgattaa |
13271463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 6244132 - 6244418
Alignment:
| Q |
1 |
ctcatgaggtttctattcggttgacgatccgccaagacggagacacgttcttcagtttctgagccatccatttctctccattcatcatacgacaaactta |
100 |
Q |
| |
|
|||| |||||| ||||| |||||| || || |||||| |||||| || |||||||||||||| |||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
6244132 |
ctcacgaggttactatttggttgaagagcctccaagatagagacatgtgcttcagtttctgagtcatctatttctctccattcatcgtacgacaaactta |
6244231 |
T |
|
| Q |
101 |
attcttctaaatttttcttatctttcaaatttgctgccatagcatctgctggatcggccacatttttcaaccctgaaatttgaagccttcctttaaggtg |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
6244232 |
attcttctaaatgtttcttatctttcaaatttgctgccatagcatctgctggatcagccacatttttcaaccctgaaattcgaagtcttcctctaaggtg |
6244331 |
T |
|
| Q |
201 |
gttgagttctgccaactgcttaatatcaaatccacgctgctctcccacaacaaaatcagtcagtatctcaagattgattaaccctct |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| |
|
|
| T |
6244332 |
gttgagttctgccaactgcttaatatcaaatccacgctgctctcccacaataaaatcagtcagcatctcaaggttgattaaccctct |
6244418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 32 - 287
Target Start/End: Original strand, 6264555 - 6264810
Alignment:
| Q |
32 |
ccaagacggagacacgttcttcagtttctgagccatccatttctctccattcatcatacgacaaacttaattcttctaaatttttcttatctttcaaatt |
131 |
Q |
| |
|
||||||| |||| || | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
6264555 |
ccaagaccgagaaacatgcttcagttactgagccatccatttctctccattcatcatacgacaaacttaattcttctaaatgtttcttatgtttcaaatt |
6264654 |
T |
|
| Q |
132 |
tgctgccatagcatctgctggatcggccacatttttcaaccctgaaatttgaagccttcctttaaggtggttgagttctgccaactgcttaatatcaaat |
231 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6264655 |
tgctgccatagcatctgctggatcagccacatttttcaaccctgaaatttgaagccttcctttaaggtggttgagttctgccaactgcttaatatcaaat |
6264754 |
T |
|
| Q |
232 |
ccacgctgctctcccacaacaaaatcagtcagtatctcaagattgattaaccctct |
287 |
Q |
| |
|
||| | |||||||||||||||||||| ||||| |||||||| || ||||||||||| |
|
|
| T |
6264755 |
ccatgttgctctcccacaacaaaatcggtcagcatctcaaggtttattaaccctct |
6264810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 6167730 - 6168020
Alignment:
| Q |
1 |
ctcatgaggtttctattcggttgacgatccgccaagacggagacacgttcttcagtttctgagccatccatttctctccattcatcatacgacaaactta |
100 |
Q |
| |
|
|||||||| |||||||| |||||| || || ||||||| ||| |||| |||||||||||||||| |||||||||||||||||||| || |||| ||| |
|
|
| T |
6167730 |
ctcatgagatttctatttggttgaagagcctccaagaccaagagacgtgcttcagtttctgagccttccatttctctccattcatcgtatgacatgatta |
6167829 |
T |
|
| Q |
101 |
attcttctaaatttttcttatctttcaaatttgctgccatagcatctgctggatcggccacatttttcaaccctgaaatttgaagccttcctttaaggtg |
200 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6167830 |
attcttgtaaatgtttcttatctttcaaatttgctgccatagcatctgctggatcggtcacattcttcaaccctgaaatttgaagccttcctttaaggtg |
6167929 |
T |
|
| Q |
201 |
gttgagttctgccaactgcttaatatcaaatccacgctgctctcccacaacaaaatcagtcagtatctcaagattgattaaccctcttatc |
291 |
Q |
| |
|
||| |||||| ||||| ||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
6167930 |
gttaagttcttccaacagcttaatatcatatccatgttgctctcccacaacaaaatcagtcagcatctcaagattgattaatactcttatc |
6168020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 59 - 277
Target Start/End: Original strand, 6237651 - 6237868
Alignment:
| Q |
59 |
ctgagccatccatttctctccattcatcatacgacaaacttaattcttctaaatttttcttatctttcaaatttgctgccatagcatctgctggatcggc |
158 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6237651 |
ctgagccatccatttctctcaattcatcgtacgacaaacttaattcttctaaatgtttcttatctttcaaatttgctgccatagcatctgctggatcagc |
6237750 |
T |
|
| Q |
159 |
cacatttttcaaccctgaaatttgaagccttcctttaaggtggttgagttctgccaactgcttaatatcaaatccacgctgctctcccacaacaaaatca |
258 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
6237751 |
aacattta-caaccctgaaatttgaagccttcctttaaggtggttgacttctgccaactgcttaatatcatatccatgttgctctcccacaacaaaatca |
6237849 |
T |
|
| Q |
259 |
gtcagtatctcaagattga |
277 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
6237850 |
gtcagaatctcaagattga |
6237868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 7748841 - 7749111
Alignment:
| Q |
1 |
ctcatgaggtttctattcggttgacgatccgccaagacggagacacgttcttcagtttctgagccatccatttctctccattcatcatacgacaaactta |
100 |
Q |
| |
|
||||||||||||||||| ||||| || || | ||||| |||||| || |||||||| |||| |||||||||||||||||||||||||| || | |||| |
|
|
| T |
7748841 |
ctcatgaggtttctatttggttggagagcctctaagacagagacatgtgcttcagttactgatccatccatttctctccattcatcatatgatacgctta |
7748940 |
T |
|
| Q |
101 |
attcttctaaatttttcttatctttcaaatttgctgccatagcatctgctggatcggccacatttttcaaccctgaaatttgaagccttcctttaaggtg |
200 |
Q |
| |
|
|||||||||||| || ||||||| |||||||||||||| |||||| || |||||| ||||| ||||||||||||||||||||||||| || ||| || |
|
|
| T |
7748941 |
attcttctaaatgttctttatcttccaaatttgctgccacagcatcagcgggatcgatgacattattcaaccctgaaatttgaagccttcgttgaagatg |
7749040 |
T |
|
| Q |
201 |
gttgagttctgccaactgcttaatatcaaatccacgctgctctcccacaacaaaatcagtcagtatctcaa |
271 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7749041 |
gttgagttccgccaactgtttaatgtcaaatccacgctgctctcccacaacaaaatcagtcagcatctcaa |
7749111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 6915940 - 6916225
Alignment:
| Q |
1 |
ctcatgaggtttctattcggttgacgatccgccaagacggagacacgttcttcagtttctgagccatccatttctctccattcatcatacgacaaactta |
100 |
Q |
| |
|
|||||||| |||||||| |||||| || || |||||| |||| || |||||||| |||| || ||| ||||||||||||||||| |||||||||| |
|
|
| T |
6915940 |
ctcatgagatttctatttggttgaagagcctccaagatagagatttgtgcttcagttactgacagattcatatctctccattcatcatatgacaaactta |
6916039 |
T |
|
| Q |
101 |
attcttctaaatttttcttatctttcaaatttgctgccatagcatctgctggatcggccacatttttcaaccctgaaatttgaagccttcctttaaggtg |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| |||||||||| || | |
|
|
| T |
6916040 |
gttcttctaaatgtttcttatctttcaaatttgctgccacagcatctgcaggatcaatgacatttttcaaccctgaaatttggagccttccttgaatata |
6916139 |
T |
|
| Q |
201 |
gttgagttctgccaactgcttaatatcaaatccacgctgctctcccacaacaaaatcagtcagtatctcaagattgattaaccctc |
286 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| || ||| |||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
6916140 |
attgagttccgccaactgcttaatatcagatccacacttctcccccacaacaaaatcagtcagcatctcaagattgtttaaccctc |
6916225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 6898927 - 6899217
Alignment:
| Q |
1 |
ctcatgaggtttctattcggttgacgatccgccaagacggagacacgttcttcagtttctgagccatccatttctctccattcatcatacgacaaactta |
100 |
Q |
| |
|
|||||||||||| |||| |||||| || || | ||||| ||||||||| ||| |||| |||| |||||||||| | |||| ||||| || |||| ||||| |
|
|
| T |
6898927 |
ctcatgaggtttatatttggttgaagagcctctaagacagagacacgtgctttagttactgatccatccatttttatccaatcatcgtatgacagactta |
6899026 |
T |
|
| Q |
101 |
attcttctaaatttttcttatctttcaaatttgctgccatagcatctgctggatcggccacatttttcaaccctgaaatttgaagccttcctttaaggtg |
200 |
Q |
| |
|
|||||||||| | || || |||||||||| |||||| | ||||| ||| ||||| || |||| |||||||||||||||||||||||||| ||| || |
|
|
| T |
6899027 |
attcttctaactgttctttgtctttcaaatatgctgctacagcatatgcaggatctttgacgttttccaaccctgaaatttgaagccttccttgaagttg |
6899126 |
T |
|
| Q |
201 |
gttgagttctgccaactgcttaatatcaaatccacgctgctctcccacaacaaaatcagtcagtatctcaagattgattaaccctcttatc |
291 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| |
|
|
| T |
6899127 |
gttgagtttccccaactgcttaatatcaaattcacgctgctctcccacaacaaaatcagtcagcatctcaagattgtttaaccctcctatc |
6899217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 6592543 - 6592259
Alignment:
| Q |
1 |
ctcatgaggtttctattcggttgacgatccgccaagacggagacacgttcttcagtttctgagccatccatttctctccattcatcatacgacaaactta |
100 |
Q |
| |
|
||||||||||||||||| |||||| || | ||| ||| ||| || || | |||||| |||||||||||||| | || | |||||| |||| ||||| |
|
|
| T |
6592543 |
ctcatgaggtttctatttggttgaagaatctccatgacagaggcatgtgcctcagttattgagccatccattttttgacaataatcatatgacatactta |
6592444 |
T |
|
| Q |
101 |
attcttctaaatttttcttatctttcaaatttgctgccatagcatctgctggatcggccacatttttcaaccctgaaatttgaagccttcctttaaggtg |
200 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |||||||||||| |||| ||||||| || |||||||||| |||| ||||||| ||| || |
|
|
| T |
6592443 |
attcttttaaatgtttcttatctttcaaatttgctgcaatagcatctgctagatcaatgacattttccatccctgaaattcgaaggcttccttgaagttg |
6592344 |
T |
|
| Q |
201 |
gttgagttctgccaactgcttaatatcaaatccacgctgctctcccacaacaaaatcagtcagtatctcaagattgattaaccct |
285 |
Q |
| |
|
||| |||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |||||||| |
|
|
| T |
6592343 |
gtttagttttcccaactgcttaatatcaaacccacgctgctctcccacaacaaaatcagtcagcatttcaagattgtttaaccct |
6592259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 283
Target Start/End: Original strand, 6881359 - 6881637
Alignment:
| Q |
5 |
tgaggtttctattcggttgacgatccgccaagacggagacacgttcttcagtttctgagccatccatttctctccattcatcatacgacaaacttaattc |
104 |
Q |
| |
|
|||||||| |||| |||||| || || ||||||| ||| | || |||||||| |||| |||||||||||||||||||||| || |||| |||||| || |
|
|
| T |
6881359 |
tgaggtttatatttggttgaagagcctccaagacagaggcttgtgcttcagttactgatccatccatttctctccattcattgtatgacatacttaaatc |
6881458 |
T |
|
| Q |
105 |
ttctaaatttttcttatctttcaaatttgctgccatagcatctgctggatcggccacatttttcaaccctgaaatttgaagccttcctttaaggtggttg |
204 |
Q |
| |
|
|||||||| || ||||||| |||||||||||||| ||||| ||| ||||| ||||||| ||||||||||||||||||| |||| | ||| |||||| |
|
|
| T |
6881459 |
ttctaaatgttctttatcttccaaatttgctgccacagcatgtgcaggatcattgacattttccaaccctgaaatttgaagctttccatgaagttggttg |
6881558 |
T |
|
| Q |
205 |
agttctgccaactgcttaatatcaaatccacgctgctctcccacaacaaaatcagtcagtatctcaagattgattaacc |
283 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
6881559 |
agtttccccaacattttaatatcaaatccacgctgctctcccacaacaaaatcagtcagcatctcaagattgtttaacc |
6881637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 6723269 - 6722998
Alignment:
| Q |
1 |
ctcatgaggtttctattcggttgacgatccgccaagacggagacacgttcttcagtttctgagccatccatttctctccattcatcatacgacaaactta |
100 |
Q |
| |
|
|||||||||||| |||| |||||| || || ||||||| |||||| | ||| |||| |||| |||| ||||| ||||||| ||||||| |||| ||||| |
|
|
| T |
6723269 |
ctcatgaggtttttatttggttgaagagcctccaagacagagacatctgctttagttactgatccattcatttttctccatccatcatatgacatactta |
6723170 |
T |
|
| Q |
101 |
attcttctaaatttttcttatctttcaaatttgctgccatagcatctgctggatcggccacatttttcaaccctgaaatttgaagccttcctttaaggtg |
200 |
Q |
| |
|
|||||||||||| || ||||||| |||||| ||||||| ||||| ||| | | ||||||| |||||| ||||||||||||||||||| ||| || |
|
|
| T |
6723169 |
attcttctaaatgttctttatcttccaaattcgctgccacagcatgtgcagtttttttgacattttccaacccagaaatttgaagccttccttgaagttg |
6723070 |
T |
|
| Q |
201 |
gttgagttctgccaactgcttaatatcaaatccacgctgctctcccacaacaaaatcagtcagtatctcaag |
272 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||| |||| ||||||| |||| |||||||| |
|
|
| T |
6723069 |
gttgagtttccccaactgcttaatatcaaatccacgctgctttccgacaaaaaaatcactcagcatctcaag |
6722998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 8569949 - 8569899
Alignment:
| Q |
212 |
ccaactgcttaatatcaaatccacgctgctctcccacaacaaaatcagtca |
262 |
Q |
| |
|
|||||| |||||||||| |||||| |||| ||||||||||||||||||||| |
|
|
| T |
8569949 |
ccaactccttaatatcagatccactctgcactcccacaacaaaatcagtca |
8569899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 256
Target Start/End: Original strand, 5279607 - 5279747
Alignment:
| Q |
116 |
tcttatctttcaaatttgctgccatagcatctgctggatcggccacatttttcaaccctgaaatttgaagccttcctttaaggtggttgagttctgccaa |
215 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||| |||| | ||||||| |||| |||||| ||| ||||| ||| |||||||||| | |||| |
|
|
| T |
5279607 |
tcttatttttcaaatttgcttccacagcatctgcacgatcagtgacattttccaactgtgaaatacaaagtgttcctcgaagatggttgagtttttccaa |
5279706 |
T |
|
| Q |
216 |
ctgcttaatatcaaatccacgctgctctcccacaacaaaat |
256 |
Q |
| |
|
|| |||||||| | | |||| ||||||||||||||||||| |
|
|
| T |
5279707 |
ctccttaatattagacccactatgctctcccacaacaaaat |
5279747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 8588674 - 8588730
Alignment:
| Q |
99 |
taattcttctaaatttttcttatctttcaaatttgctgccatagcatctgctggatc |
155 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| || ||||||||| ||||| |
|
|
| T |
8588674 |
taattcttctaaatacttcttatctttcaaattggctgtcacagcatctgcaggatc |
8588730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 6850405 - 6850327
Alignment:
| Q |
66 |
atccatttctctccattcatcatacgacaaacttaattcttctaaatttttcttatctttcaaatttgctgccatagcat |
145 |
Q |
| |
|
||||||||| ||| |||| || || |||| ||||||||||||||||| || ||||||| |||||||||||||| ||||| |
|
|
| T |
6850405 |
atccatttc-ctctattcctcgtatgacatacttaattcttctaaatgttctttatcttccaaatttgctgccacagcat |
6850327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 6795729 - 6795692
Alignment:
| Q |
98 |
ttaattcttctaaatttttcttatctttcaaatttgct |
135 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||| |
|
|
| T |
6795729 |
ttaattcttctacatgtttcttatctttcaaatttgct |
6795692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 7586792 - 7586829
Alignment:
| Q |
98 |
ttaattcttctaaatttttcttatctttcaaatttgct |
135 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||| |
|
|
| T |
7586792 |
ttaattcttctacatgtttcttatctttcaaatttgct |
7586829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 8470487 - 8470524
Alignment:
| Q |
98 |
ttaattcttctaaatttttcttatctttcaaatttgct |
135 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||| |
|
|
| T |
8470487 |
ttaattcttctacatgtttcttatctttcaaatttgct |
8470524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 35141559 - 35141273
Alignment:
| Q |
1 |
ctcatgaggtttctattcggttgacgatccgccaagacggagacacgttcttcagtttctgagccatccatttctctccattcatcatacgacaaactta |
100 |
Q |
| |
|
||||||||||||||||| || ||| || | |||| || ||||||| | |||| ||| |||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
35141559 |
ctcatgaggtttctatttggctgaagagactccaacactgagacacatgcttctgttactgagccatcgatttctctccattcatcatacgacacactta |
35141460 |
T |
|
| Q |
101 |
attcttctaaatttttcttatctttcaaatttgctgccatagcatctgctggatcggccacatttttcaaccctgaaatttgaagccttcctttaaggtg |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||| |||||||| ||| |||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
35141459 |
attcttctaaatgtttcttatctttcaaatttgctgccataacatcagctggatcagccgcatttttcaaccctgaaattcgaagccttccttcaaggtg |
35141360 |
T |
|
| Q |
201 |
gttgagttctgccaactgcttaatatcaaatccacgctgctctcccacaacaaaatcagtcagtatctcaagattgattaaccctct |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| | ||||||||||||||||||||||| |
|
|
| T |
35141359 |
gttgagttctgccaactgcttaatatcaaatccatgttgctctcccacaataaaatcagtcggcatctcaagattgattaaccctct |
35141273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 13513 - 13441
Alignment:
| Q |
66 |
atccatttctctccattcatcatacgacaaacttaattcttctaaatttttcttatctttcaaatttgctgcca |
139 |
Q |
| |
|
||||||||| ||| |||| || || |||| ||||||||||||||||| || ||||||| |||||||||||||| |
|
|
| T |
13513 |
atccatttc-ctctattcgtcgtatgacatacttaattcttctaaatgttctttatcttccaaatttgctgcca |
13441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1643 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 1089 - 1125
Alignment:
| Q |
99 |
taattcttctaaatttttcttatctttcaaatttgct |
135 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| |
|
|
| T |
1089 |
taattcttctacatgtttcttatctttcaaatttgct |
1125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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