View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_5 (Length: 615)
Name: NF1999_low_5
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 602
Target Start/End: Complemental strand, 45484145 - 45483547
Alignment:
| Q |
1 |
caaaaatgagtttcttttcactctattagcgcatagaaagtttatgttttcatttatttacattgcagatatgttatgtttcctgtttcttcacattaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45484145 |
caaaaatgagtttcttttcactctattagcgcatagtaagtttatgttttcatttatttaca---cagatatgttatgtttcctgtttcttcacattaac |
45484049 |
T |
|
| Q |
101 |
ttcaacctttagttaacataagctatttccattattacattaacaaattacactgttgtcaatgaattctttttaatgttttgaagtagtggccgcttcc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
45484048 |
ttcaacctttagttaacataagctatttccattattacattaacaaattacactgttgtcaatgaattatttttaatgttttgaagtagtggccccttcc |
45483949 |
T |
|
| Q |
201 |
aaattaaaaaacagaacaagtgtgagaatgaaatagatttgcagctaagtacagctgcacttatagaattcaaataatgtaatgtatacaataagtaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45483948 |
aaattaaaaaacagaacaagtgtgagaatgaaatagatttgcagctaagtacagctgcacttatagaattcaaataatgtaatgtatacaataagtaaca |
45483849 |
T |
|
| Q |
301 |
ctatctaatgtaatctgaaatgcattgtagtgttttcttcttccttctagtatagtactaaaccatagaccattaagacagagaacnnnnnnnnnnnnnn |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45483848 |
ctatctaatgtaatctgaaatgcattgtagtgttttcttcttccttctagtatagtactaaaccatagaccattaagacagagaacaaaaaatcacaaaa |
45483749 |
T |
|
| Q |
401 |
nnnnnnttatgctccataagctagctatacgggtaaagaataaaatatgaatgattagatgacactttttatagtgcacgtgattttatgatatcaaagc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45483748 |
aataaattatgctccataagctagctatacgggtaaagaataaaatatgaataattagatgacactttttatagtgcacgtgattttatgatatcaaagc |
45483649 |
T |
|
| Q |
501 |
tcatttcactaggatctgttgcttgcaactcaacttgaatgccatcaagttccctcttgaatctgtccttggtgctagcatacaccatcttatgtctcac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45483648 |
tcatttcactaggatctgttgcttgcaactcaacttgaatgccatcaagttccctcttgaatctgtccttggtgctagcatacaccatcttatgtctcac |
45483549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 198 - 310
Target Start/End: Complemental strand, 45494297 - 45494185
Alignment:
| Q |
198 |
tccaaattaaaaaacagaacaagtgtgagaatgaaatagatttgcagctaagtacagctgcacttatagaattcaaataatgtaatgtatacaataagta |
297 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||| |||| ||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||| |
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|
| T |
45494297 |
tccaaattcaaaaacagaacaagtgtaagaatgaaatggattagcagctaagtacaattgcacttacagaatccaaataatgtatcgtatacaataagta |
45494198 |
T |
|
| Q |
298 |
acactatctaatg |
310 |
Q |
| |
|
||||| ||||||| |
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|
| T |
45494197 |
acactttctaatg |
45494185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 591
Target Start/End: Complemental strand, 29502232 - 29502151
Alignment:
| Q |
510 |
taggatctgttgcttgcaactcaacttgaatgccatcaagttccctcttgaatctgtccttggtgctagcatacaccatctt |
591 |
Q |
| |
|
||||||| || ||||||||||||||||| || |||||||| ||||| ||||| || || |||| ||||||||| | |||||| |
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|
| T |
29502232 |
taggatcagtagcttgcaactcaacttgtatcccatcaagctcccttttgaacctatctttggagctagcataaatcatctt |
29502151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 497 - 591
Target Start/End: Original strand, 40864800 - 40864894
Alignment:
| Q |
497 |
aagctcatttcactaggatctgttgcttgcaactcaacttgaatgccatcaagttccctcttgaatctgtccttggtgctagcatacaccatctt |
591 |
Q |
| |
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|||||||| ||||| ||||| |||||||||| ||||||||||||||||| | ||| ||||||||||| ||||||| || |||||||||||||| |
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|
| T |
40864800 |
aagctcatctcacttggatcagttgcttgcagttcaacttgaatgccatccaattctctcttgaatctatccttggaacttgcatacaccatctt |
40864894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 591
Target Start/End: Original strand, 36528992 - 36529073
Alignment:
| Q |
510 |
taggatctgttgcttgcaactcaacttgaatgccatcaagttccctcttgaatctgtccttggtgctagcatacaccatctt |
591 |
Q |
| |
|
||||||| |||||||||||||||| ||||| |||||||| || ||||||||||| || |||| ||| ||||| | |||||| |
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| T |
36528992 |
taggatcagttgcttgcaactcaatctgaataccatcaagctctctcttgaatctatctttggagcttgcataaatcatctt |
36529073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 497 - 591
Target Start/End: Complemental strand, 2791194 - 2791100
Alignment:
| Q |
497 |
aagctcatttcactaggatctgttgcttgcaactcaacttgaatgccatcaagttccctcttgaatctgtccttggtgctagcatacaccatctt |
591 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| | ||||||||||||||||| | |||||||||||||| ||||| | || |||||||||||||| |
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|
| T |
2791194 |
aagctcatctcacttggatcagttgcttggagttcaacttgaatgccatccaactccctcttgaatctatccttagaacttgcatacaccatctt |
2791100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 591
Target Start/End: Complemental strand, 10635576 - 10635487
Alignment:
| Q |
502 |
catttcactaggatctgttgcttgcaactcaacttgaatgccatcaagttccctcttgaatctgtccttggtgctagcatacaccatctt |
591 |
Q |
| |
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||||||| ||||||| ||||| |||||||| | |||||| ||||| || ||||||||||| || || |||||||| ||||| | |||||| |
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| T |
10635576 |
catttcagtaggatcagttgcctgcaactctatttgaattccatccagctccctcttgaacctttctttggtgcttgcataaatcatctt |
10635487 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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