View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_50 (Length: 279)
Name: NF1999_low_50
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 103 - 265
Target Start/End: Original strand, 12096484 - 12096646
Alignment:
| Q |
103 |
ggtcctagaatggtaaattgaaattgaaaaacgtgttttgttgatctttaggctggaggaagaatcatatttattcttcaaatacatttaaataaacaaa |
202 |
Q |
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| T |
12096484 |
ggtcctagaatgggaaattgaaattgaaaaacgtgttttgttgatctttaggctggaggaagaatcatatttattcttcaaatgcatttaaataaacaaa |
12096583 |
T |
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| Q |
203 |
aatgttatttttgtttaacaaaaatgtttagatacagaatttaatcatcaatttgtatgtaat |
265 |
Q |
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| T |
12096584 |
aatgttatttttgtttaacaaaaatgtctagatgcagaatttaatcatcaatttgtatgtaat |
12096646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 12095941 - 12095866
Alignment:
| Q |
107 |
ctagaatggtaaattgaaattgaaaaacgtgttttgttgatctttaggctggaggaagaatcatatttattcttcaa |
183 |
Q |
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| T |
12095941 |
ctagaatggtaaattgaaattaaaaaatgtgttttgttgat-tttaggctcgaggaagaatcagatgtattattcaa |
12095866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 12096377 - 12096412
Alignment:
| Q |
1 |
aggaataggttttgaaggaaatcatgcacaagtaaa |
36 |
Q |
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| T |
12096377 |
aggaataggttttgaaggaaatcatgcacaagtaaa |
12096412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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