View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_52 (Length: 272)
Name: NF1999_low_52
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 5673649 - 5673889
Alignment:
| Q |
13 |
gagataatgttttggtttcaattcatgaatattcttaaggtatgtaaatgtagcaaattttctacatgttttgggacagaccttaaaaagatgtttaaat |
112 |
Q |
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| T |
5673649 |
gagataatgttttggtttcaattcatgaatattcttaaggtatgtaaatgtagcaaattttctacatgttttgggacagaccttaaaaagatgtttaaat |
5673748 |
T |
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| Q |
113 |
ttggaagagaatcagctgtcggatggactgtgcaaccaaaactccaaacttcttttgatttgatcgctggttggttcatgaataataatgggtggaaaat |
212 |
Q |
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| T |
5673749 |
ttgtaatagaatcagctgtcggatggactatgcaaccaaaacttcaaacttcttttgatttgatcgctggttggttcatgaataataatgggtggaaaat |
5673848 |
T |
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| Q |
213 |
aaatatttgattgagacactatgagaaacgcctaacacata |
253 |
Q |
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| T |
5673849 |
aaatatttgattgagacactatgagaaacgcctaacacata |
5673889 |
T |
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