View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1999_low_53 (Length: 271)
Name: NF1999_low_53
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_53 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 24601215 - 24600971
Alignment:
| Q |
15 |
tcatcaactccaagttttcatctgatatttgattatatatctcagcatgattacatttctgcacatagagaataatattgttaaacaatggttaatgcct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24601215 |
tcatcaactccaagttttcatctgatatttgattatatatctcagcatgattacatttctgcacatagagaataatattgttaaacaatggttaatgcct |
24601116 |
T |
|
| Q |
115 |
tcacaaattattttacatgtctttggat------atatgtagtgcattttgaattccattaccttgacccatttagcataaaggttaagccgagtcaaca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24601115 |
tcacaaattattttacatgtctttggatatatatatatgtagtgaattttgaatttcattaccttgacccatttagcataaaggttaagccgagtcaaca |
24601016 |
T |
|
| Q |
209 |
tcactctttcagcaagctcttgttgttcctgtcaagtgaatataa |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24601015 |
tcactctttcagcaagctcttgttgttcctgtcaagtgaatataa |
24600971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University