View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_54 (Length: 257)
Name: NF1999_low_54
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 37686330 - 37686412
Alignment:
| Q |
54 |
ttaagatattctgatacaaaaatatgtccattcataataattaaggataataaattacagcactgaaatggcatactaaaaat |
136 |
Q |
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| T |
37686330 |
ttaagatattctaatacaaaaatatgtccattcataataattaaggataataaattacagcactgaaatggcatactaaaaat |
37686412 |
T |
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Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 37699188 - 37699106
Alignment:
| Q |
54 |
ttaagatattctgatacaaaaatatgtccattcataataattaaggataataaattacagcactgaaatggcatactaaaaat |
136 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37699188 |
ttaagatattctaatacaaaaatatgtccattcataataattaaggataataaattacagcactgaaatggcatactaaaaat |
37699106 |
T |
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