View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1999_low_55 (Length: 254)

Name: NF1999_low_55
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1999_low_55
NF1999_low_55
[»] chr5 (3 HSPs)
chr5 (21-80)||(34023003-34023062)
chr5 (192-254)||(34023211-34023272)
chr5 (195-244)||(14156967-14157016)
[»] chr4 (3 HSPs)
chr4 (192-249)||(35422505-35422562)
chr4 (195-250)||(2392558-2392613)
chr4 (192-250)||(36162115-36162173)
[»] chr2 (1 HSPs)
chr2 (192-240)||(14505968-14506016)


Alignment Details
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 34023003 - 34023062
Alignment:
Q  21 aggatttacctaaaatctgaaatttatgggtggattcactactacaatgttgtaaatagg 80  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||    
T  34023003 aggatttacctaaaatctgaaatttatgggtggaatcacttctacaatgttttaaatagg 34023062  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 34023211 - 34023272
Alignment:
Q  192 gtcttgctaacgagtgtcctaaaagcattggttaaagaatcctttaatagaaactttgtatta 254  Q
    |||||||||||||||| ||||||  |||||||||||| |||| ||||||||||||||||||||    
T  34023211 gtcttgctaacgagtgccctaaagacattggttaaag-atcccttaatagaaactttgtatta 34023272  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 14156967 - 14157016
Alignment:
Q  195 ttgctaacgagtgtcctaaaagcattggttaaagaatcctttaatagaaa 244  Q
    |||||||| |||||||||||  ||||| |||| |||||||||||||||||    
T  14156967 ttgctaacaagtgtcctaaagacattgattaatgaatcctttaatagaaa 14157016  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 35422562 - 35422505
Alignment:
Q  192 gtcttgctaacgagtgtcctaaaagcattggttaaagaatcctttaatagaaactttg 249  Q
    ||||||||||| |||| ||||| |||| |||||||||||| |||||||| ||||||||    
T  35422562 gtcttgctaactagtgccctaagagcaatggttaaagaattctttaataaaaactttg 35422505  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 2392558 - 2392613
Alignment:
Q  195 ttgctaacgagtgtcctaaaagcattggttaaagaatcctttaatagaaactttgt 250  Q
    |||||||| |||| ||||| |||||||||||| |||||| ||| ||||||||||||    
T  2392558 ttgctaaccagtgccctaagagcattggttaaggaatccattagtagaaactttgt 2392613  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 36162115 - 36162173
Alignment:
Q  192 gtcttgctaacgagtgtcctaaaagcattggttaaagaatcctttaatagaaactttgt 250  Q
    ||||||||| | |||| |||||| ||||| ||||| |||||| ||||||||||||||||    
T  36162115 gtcttgctatctagtgccctaaaggcattagttaaggaatccattaatagaaactttgt 36162173  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 14505968 - 14506016
Alignment:
Q  192 gtcttgctaacgagtgtcctaaaagcattggttaaagaatcctttaata 240  Q
    ||||||||| |||||| ||||| |||||||||||| |||||| ||||||    
T  14505968 gtcttgctagcgagtgccctaagagcattggttaaggaatcccttaata 14506016  T

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