View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1999_low_6 (Length: 570)
Name: NF1999_low_6
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 233 - 547
Target Start/End: Original strand, 46009743 - 46010036
Alignment:
| Q |
233 |
cataatcacgttattgagaaattgtgatgttaatcaataaatcgtttgtgcatacaattaaacatgtgtcattatttaagccatatgcttagtttggttt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46009743 |
cataatcacgttattgagaaattgtgatgttaatcaataaatcgtttgtgcatacaattaaacatgtgtcattatttaagccatgtgcttagtttggttt |
46009842 |
T |
|
| Q |
333 |
ggtgtcaaagacattggtctttgtnnnnnnntcgttagttttccctgcagtgatttatttatttttcacttttataagactaaaacttttactgtgcgtt |
432 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46009843 |
ggtgtcaaagacattggtctttgtaaaaaaatcgttagttttccctgcagtgatttatttatttttcacttttataagactaaaacttttattgtgcgtt |
46009942 |
T |
|
| Q |
433 |
agattaattaagtcaaacaaacattaaataattcatatgcttaaaaatgaatattaattttgttgcgagttaaataaatattttaaaacaaatgtcgttt |
532 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46009943 |
aga---------------------taaataattcatatgcttaaaaatgaatattaattttgttgcgagttaaataaatattttaaaacaaatgtcgttt |
46010021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 46009471 - 46009695
Alignment:
| Q |
16 |
agaatatcagaatcaggaagaccgtttatcaagtgcaacgacgcgggtgtgcgaatagcagagtcacactgtgagaatacactgcgtgaatggtttgatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
46009471 |
agaatatcagaatcaggaagaccgtttatcaagtgcaacgacgcgggtgtgcgaatagcagagtcacactgtgagaaaacactgcgtgaatggttggatg |
46009570 |
T |
|
| Q |
116 |
agaaagagtactctattgatgaacttgtatatgatcatgtgcttggtcctgatcttgctttttctcctttggtttttgtcaaggtacgtactatcttttt |
215 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46009571 |
agaaagagtactctgttgatgaacttgtatatgatcatgtgcttggtcctgatcttgcattttctcctttggtttttgtcaaggtacgtactatcttttt |
46009670 |
T |
|
| Q |
216 |
catgtttatataagagacataatca |
240 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
46009671 |
catgtttatatattagacataatca |
46009695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 15922124 - 15922298
Alignment:
| Q |
34 |
agaccgtttatcaagtgcaacgacgcgggtgtgcgaatagcagagtcacactgtgagaatacactgcgtgaatggtttgatgagaaagagtactctattg |
133 |
Q |
| |
|
|||||||||||||| ||||| || || ||||||||||| || ||||| || ||||| || || ||| | |||||||| ||||| || ||||| || ||| |
|
|
| T |
15922124 |
agaccgtttatcaaatgcaatgatgccggtgtgcgaatcgcggagtcgcagtgtgataaaacgctgagggaatggttggatgaaaatgagtattcagttg |
15922223 |
T |
|
| Q |
134 |
atgaacttgtatatgatcatgtgcttggtcctgatcttgctttttctcctttggtttttgtcaaggtacgtacta |
208 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15922224 |
atgaacttgttcatgatcatgtgcttggtcctgatcttgctttttctcctttggtttttgtcaaggtacgtacta |
15922298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 13114413 - 13114593
Alignment:
| Q |
25 |
gaatcaggaagaccgtttatcaagtgcaacgacgcgggtgtgcgaatagcagagtcacactgtgagaatacactgcgtgaatggtttgatgagaaagagt |
124 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || || || | || ||| ||| ||||| || || |||| ||||||||||||||| ||||| | |
|
|
| T |
13114413 |
gaatctggaagaccgtttatcaagtgcaacgatgcaggagtacgcgtggctgagacacggtgtgataaaacgctgcatgaatggtttgatgaaaaagaat |
13114512 |
T |
|
| Q |
125 |
actctattgatgaacttgtatatgatcatgtgcttggtcctgatcttgctttttctcctttggtttttgtcaaggtacgta |
205 |
Q |
| |
|
|| | |||| | | |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13114513 |
acagtgttgaaggatttgtcccagatcatgtgcttggtcctgatcttgctttttctccattggtttttgtcaaggtacgta |
13114593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University