View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_64 (Length: 241)
Name: NF1999_low_64
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 2065918 - 2066130
Alignment:
| Q |
16 |
gatgatgttttagtcagaagtagggaaagaccgccgcactcaaagaatacttatagcnnnnnnnattaaaagaaacttaattcattcatttcatttaaaa |
115 |
Q |
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| T |
2065918 |
gatgatgttttagtcagaagtaggaaaataccaccgcactcaaagaatacttataactttttttattacaagaaacttaattcattcattttatttaaaa |
2066017 |
T |
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| Q |
116 |
taagagtaaagatataagataaaatttaaacaaaaatacgaaaatcatcatgacttggagttatcctagctaaactctgagtttcttcattgattttgtc |
215 |
Q |
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| T |
2066018 |
taagagtaaagatataagatgaaatttaaacaaaaatacgaaaatcatcatgacttggagttatcctagctaaactctgagtttcttcattgattttgtc |
2066117 |
T |
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| Q |
216 |
ttctaataaatct |
228 |
Q |
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| T |
2066118 |
ttctaataaatct |
2066130 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 28031629 - 28031540
Alignment:
| Q |
102 |
catttcatttaaaataagagtaaagatataagataaaatttaaacaaaaatacgaaaatcatcatgacttggagttatcctagctaaact |
191 |
Q |
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| T |
28031629 |
cattttatttaaaataaaagtagagatacaagatgaaatttgaatgaaaatacgaaaactagcatgacatggagttatcctagctaaact |
28031540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 7515117 - 7515026
Alignment:
| Q |
102 |
catttcatttaaaataagagtaaagatataagataaaatttaaacaaaaatacgaaaatcatcatgacttggagttatcctagctaaactctgag |
196 |
Q |
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| T |
7515117 |
catttcatttaaaataagagtagatatataag---aaattcaaataaatatacacaaaccagcatgacgtggagctagcctagctaaactatgag |
7515026 |
T |
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