View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_69 (Length: 237)
Name: NF1999_low_69
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 830371 - 830577
Alignment:
| Q |
19 |
attttaaacgacggaatgtaaaaaagacgacgttcaagtgtattaacaacggattgacgaaatgcttcacgagaatcagagcaaaaagcagagggaagag |
118 |
Q |
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| T |
830371 |
attttaaacgacggaatgtaaaaaagacgacgttcaagtgtattaacaacggattgacgaaatgcgtcacgagaatcggagccggaagcagagagaagag |
830470 |
T |
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| Q |
119 |
attgaagggatttgcggagggattcttcggtgctggccatgggagta---gttgttgttgtggaaatgtaagggagggaagaagataattatgatcaagg |
215 |
Q |
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| T |
830471 |
attgaagggatttgcggagagattcttcggtgctggccatgggagtagttgttgttgttgtggaaatgaaagggagggaagaagataattatgatcaagg |
830570 |
T |
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| Q |
216 |
ttctgtg |
222 |
Q |
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| T |
830571 |
ttttgtg |
830577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 941895 - 941968
Alignment:
| Q |
22 |
ttaaacgacggaatgtaaaaaagacgacgttcaagtgtattaacaacggattgacgaaatgcttcacgagaatc |
95 |
Q |
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| T |
941895 |
ttaaacgaaggaatataaaacaaacggcgttcaagcgtattgttaacagattgacgaaatgcttcacgcgaatc |
941968 |
T |
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