View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_72 (Length: 235)
Name: NF1999_low_72
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_72 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 39789555 - 39789765
Alignment:
| Q |
7 |
aagaatcaagggacaaccttataaaagttattctcaaactcaatcaccattaaccaatcagacaacatgttgctaagaagctcttcaacacctgttcttg |
106 |
Q |
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| T |
39789555 |
aagaatcaagggacaaccttataaaagttattctcatactcaatcatcattaaccaatcagaaaacatgttgctaagaagctcttcaacacctgttcttg |
39789654 |
T |
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| Q |
107 |
gtaatctcatatcttccttcacagatactactcctactcatattcaaagtcttcatcttgaaacttgtcatgcactcaaacctctaccaccaccaaccac |
206 |
Q |
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| T |
39789655 |
gtaatctcatatcttccttcacagataatactcctactcatattcaaagtcttcaccttgaaacttgtcatgcactcaaacctctaccaccaccaaccac |
39789754 |
T |
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| Q |
207 |
ttcaatccaac |
217 |
Q |
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|||||| |||| |
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| T |
39789755 |
ttcaatacaac |
39789765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 39412160 - 39412085
Alignment:
| Q |
47 |
caatcaccattaaccaatcagacaacatgttgctaagaagctcttcaacacctgttcttggtaatctcatatcttc |
122 |
Q |
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|||||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
39412160 |
caatcatcatcaaccaatcagaaaacatgttgctaagaagctcttcaacaccagttcttggttctctcctatcttc |
39412085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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