View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_74 (Length: 227)
Name: NF1999_low_74
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_74 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 40458226 - 40458441
Alignment:
| Q |
4 |
taaaagattggccaaacaagctggtttttcatcttcatacactgaaggatgatcacaagttcgttgaggcaacgtctggaggttgcatagttttttgaga |
103 |
Q |
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| T |
40458226 |
taaaagattggccaaacaagctggtttttcatcttcatacactgaaggatgatcacaagttcgttgaggcaacgtgtggaggttgcatagttttttgaga |
40458325 |
T |
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| Q |
104 |
gaacgacaattgaaatccttgattcctgaattgccttgagaatagaaggtgaaagttgaagttcctcatcatcatcattttgaatttgatgtggtaagaa |
203 |
Q |
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| T |
40458326 |
gaacgacgattgaaatccttgattcctgaattgccttgagaatagaaggtgaaagttgaagttcc---tcatcatcattttgaatttgatcatgtgggaa |
40458422 |
T |
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| Q |
204 |
gaaggtcttcatattcttg |
222 |
Q |
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| T |
40458423 |
gaaggtcttgattttcttg |
40458441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 40405542 - 40405331
Alignment:
| Q |
4 |
taaaagattggccaaacaagctggtttttcatcttcatacactgaaggatgatcacaagttcgttgaggcaacgtctggaggttgcatagttttttgaga |
103 |
Q |
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| T |
40405542 |
taaaagattggccaaacaagctggccgtacatcttcctacaccgaatgatgttctcaagttcatctaaacaacgtgtggaggatgcgaagttttcagaga |
40405443 |
T |
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| Q |
104 |
gaacgacaattgaaatccttgattcctgaattgccttgagaatagaaggtgaaagttgaagttcctcatcatc------atcattttgaatttgatgtgg |
197 |
Q |
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| T |
40405442 |
gaacaacaattgaaatccttgactcccgaattgccttgagaat---aggtgaatgttgaagttgctcattatcattataatcattttgaatttgatgtgg |
40405346 |
T |
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| Q |
198 |
taagaagaaggtctt |
212 |
Q |
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| T |
40405345 |
gaagaagaaggtctt |
40405331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 40408000 - 40407864
Alignment:
| Q |
5 |
aaaagattggccaaacaagctggtttttcatcttcatacactgaaggatgatcacaagttcgttgaggcaacgtctggaggttgcatagttttttgagag |
104 |
Q |
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|||| |||||||||||||| || ||||||||||||||||||| ||||||| | |||||||| | || ||||| |||||| ||| || |||| |||| |
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| T |
40408000 |
aaaaaattggccaaacaagttgatttttcatcttcatacactcaaggatgttaacaagttcatctagacaacgcgtggaggatgcgaag--ttttcagag |
40407903 |
T |
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| Q |
105 |
aacgacaattgaaatccttgattcctgaattgccttgag |
143 |
Q |
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| T |
40407902 |
aacaacaatagaaatccttgcttccttaattgccttgag |
40407864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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