View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_8 (Length: 530)
Name: NF1999_low_8
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 6e-94; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 136 - 431
Target Start/End: Complemental strand, 34927900 - 34927614
Alignment:
| Q |
136 |
atttaatcatagcaagtttactcagaaaatatgcacaaaaacataaaggactggtgaaattagaaggttaaagcaaccggtatatgacatgattatcttg |
235 |
Q |
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| T |
34927900 |
atttaatcatagcaagtttactcataaaatatgcacaaaaacatataggactggtgaaattagaaggtcaaagcaaccggtatatgacatgattatcttg |
34927801 |
T |
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| Q |
236 |
aacattaaggattgacaagcaaagcaacgttgtatgccatgatttccattcagatccttgattagatcaggaaagtgcactaatctatatttttaatttt |
335 |
Q |
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| T |
34927800 |
aacattaaggattgacaagcaa-----cgttgtatgccatgatttccattcggattcttgatttgattgggagagtgcactaatctatattttttatttt |
34927706 |
T |
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| Q |
336 |
tagcaacgacatgcaaaaacattgccacaactttagttgtagaaaaatgtatttccttaccaattgcctcaaaaggaaacacatagtgatcaagga |
431 |
Q |
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| T |
34927705 |
tagcaacgatattcgaaaacattgacacaacttt----gtagagacatttctttccttaccaattgcctcaaaaggatacacatagtcaccaagga |
34927614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 34934388 - 34934314
Alignment:
| Q |
13 |
aatcaaatctcaaagactatctaatagactgcaatgtctattatggtacaaactaataactgattaggtccaaac |
87 |
Q |
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| T |
34934388 |
aatcaaatctcaaagactatctaatagactgctgggtctattatggtgcaaactaataactgattaggtccaaac |
34934314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 34934266 - 34934226
Alignment:
| Q |
135 |
catttaatcatagcaagtttactcagaaaatatgcacaaaa |
175 |
Q |
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| T |
34934266 |
catttaatcatagcaagtttactcagaaaatatgcacaaaa |
34934226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 475 - 512
Target Start/End: Complemental strand, 34934152 - 34934115
Alignment:
| Q |
475 |
gatcgatgacaatgaaattaaaagtcaaaacacacagc |
512 |
Q |
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| T |
34934152 |
gatcgatgacaatgaaattaaaagtcaaaacacacagc |
34934115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 26382326 - 26382289
Alignment:
| Q |
257 |
aagcaacgttgtatgccatgatttccattcagatcctt |
294 |
Q |
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| T |
26382326 |
aagcaacgttgtatgacatgatttccattcagatcctt |
26382289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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