View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_low_80 (Length: 207)
Name: NF1999_low_80
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_low_80 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 54457049 - 54456883
Alignment:
| Q |
20 |
gagaagagaatagaaaaagttacgaaactgaccaatagaataactttgtccttgccactggtctgtggaaaatgtttgatttcaggtggttgtgaagcat |
119 |
Q |
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| T |
54457049 |
gagaagagaatagaaaaagttacgaaactgaccaatagaataactttgtccttgtcactggtctgtggaaaatgtttgatttcaggtggttgtgaagcat |
54456950 |
T |
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| Q |
120 |
caacagcaacagggttcatcatcatcatcggtgtagaatttgaccacacagaattgagaggcttctg |
186 |
Q |
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| T |
54456949 |
caacagcaacagggttcatcatcatcatcggtgtagaatttgaccacacagaattgagaggcttctg |
54456883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 54056661 - 54056600
Alignment:
| Q |
21 |
agaagagaatagaaaaagttacgaaactgaccaatagaataactttgtccttgccactggtc |
82 |
Q |
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| T |
54056661 |
agaaaagagtagaaaacgtaatgaaactgaccaatagaataactttgtccttgtcacaggtc |
54056600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 15039756 - 15039809
Alignment:
| Q |
21 |
agaagagaatagaaaaagttacgaaac-tgaccaatagaataactttgtccttg |
73 |
Q |
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||||||||||||||||||||| ||||| | ||||||||||||| |||||||||| |
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| T |
15039756 |
agaagagaatagaaaaagttatgaaactttaccaatagaataattttgtccttg |
15039809 |
T |
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