View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1999_low_9 (Length: 520)

Name: NF1999_low_9
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1999_low_9
NF1999_low_9
[»] chr6 (5 HSPs)
chr6 (64-309)||(4183706-4183951)
chr6 (64-309)||(4744545-4744790)
chr6 (18-64)||(4183633-4183679)
chr6 (379-428)||(2332690-2332739)
chr6 (16-63)||(4744472-4744520)
[»] chr1 (7 HSPs)
chr1 (64-221)||(51382140-51382297)
chr1 (64-260)||(51857762-51857958)
chr1 (69-178)||(51221896-51222005)
chr1 (126-178)||(51763692-51763744)
chr1 (89-170)||(25611720-25611801)
chr1 (64-221)||(51781991-51782148)
chr1 (84-148)||(45693604-45693668)
[»] scaffold0244 (1 HSPs)
scaffold0244 (354-416)||(16291-16353)
[»] scaffold0171 (1 HSPs)
scaffold0171 (354-431)||(723-800)
[»] scaffold0015 (1 HSPs)
scaffold0015 (129-214)||(41147-41232)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 5e-79; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 64 - 309
Target Start/End: Original strand, 4183706 - 4183951
Alignment:
Q  64 ggcggtcgtggttggaggtggacaggcgaaggtgcttcatggcaaatttggaatcaatggaaataagagaattccatgacttgcaaacgcaactgagttt 163  Q
    ||||||||||||||||||||||||  |||||||| ||| |||| ||||||||||||  ||| |||||||||||||| |||||||||||||||| |||||     
T  4183706 ggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttg 4183805  T
Q  164 aaggaggtgtttcacagggagaagggataagatttctgccacaagatcaaatggaagaaatggaggagagttggtgggaggcagtggtgttagggttttg 263  Q
    ||||||||||||||||||||||  | ||| |||||||||||||||||| |||||||| || ||||||||||| |||||||||||| ||||||||||| ||    
T  4183806 aaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttagtgggaggcagttgtgttagggttctg 4183905  T
Q  264 gttgaggttcctcctcgtttgcaatctgtcgtcgtcgtcatatcaa 309  Q
    |||||||||||||||||||||| | ||||| |||||||||||||||    
T  4183906 gttgaggttcctcctcgtttgcgacctgtcatcgtcgtcatatcaa 4183951  T

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Target: chr6; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 64 - 309
Target Start/End: Original strand, 4744545 - 4744790
Alignment:
Q  64 ggcggtcgtggttggaggtggacaggcgaaggtgcttcatggcaaatttggaatcaatggaaataagagaattccatgacttgcaaacgcaactgagttt 163  Q
    ||||||||||||||||||||||||  |||||||| ||| |||| ||||||||||||  ||| |||||||||||| | |||||||||||||||| |||||     
T  4744545 ggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattc-aggacttgcaaacgcaacggagttg 4744643  T
Q  164 aaggagg-tgtttcacagggagaagggataagatttctgccacaagatcaaatggaagaaatggaggagagttggtgggaggcagtggtgttagggtttt 262  Q
    ||||||| |||||||||||||||  | | | |||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||| |    
T  4744644 aaggagggtgtttcacagggagacagcagaggatttctgccacaagatcgaatggaagtaacggaggagagttagtgggaggcagtggtgttagggttct 4744743  T
Q  263 ggttgaggttcctcctcgtttgcaatctgtcgtcgtcgtcatatcaa 309  Q
    ||||||||||||||||||||||| | ||||| |||||||||||||||    
T  4744744 ggttgaggttcctcctcgtttgcgacctgtcatcgtcgtcatatcaa 4744790  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 4183633 - 4183679
Alignment:
Q  18 gaactaaaaatagaggagattgagcatccagataagtggaacaaggg 64  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||    
T  4183633 gaactgaaaatagaggagattgagcatccagataagtagaacaaggg 4183679  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 428
Target Start/End: Original strand, 2332690 - 2332739
Alignment:
Q  379 agacctttcttggatgattctattggccctctttaaagttctttcattcc 428  Q
    ||||||||||||||||||| |||||| |||||| | || |||||||||||    
T  2332690 agacctttcttggatgattttattggtcctcttcacagctctttcattcc 2332739  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 4744472 - 4744520
Alignment:
Q  16 cagaactaaaaatagaggagattgagcat-ccagataagtggaacaagg 63  Q
    ||||||| |||||||||||||||| |||| |||||||||| ||||||||    
T  4744472 cagaactgaaaatagaggagattgggcatcccagataagtagaacaagg 4744520  T

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Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 64 - 221
Target Start/End: Original strand, 51382140 - 51382297
Alignment:
Q  64 ggcggtcgtggttggaggtggacaggcgaaggtgcttcatggcaaatttggaatcaatggaaataagagaattccatgacttgcaaacgcaactgagttt 163  Q
    ||||||||||||||||||| ||||  ||||| |||||| |||| || |||||||||   || |||||| |||||||||||||||| ||||||| |||||     
T  51382140 ggcggtcgtggttggaggttgacaaacgaagttgcttcttggcgaaattggaatcatgagagataagataattccatgacttgcagacgcaacggagttg 51382239  T
Q  164 aaggaggtgtttcacagggagaagggataagatttctgccacaagatcaaatggaaga 221  Q
    ||||||||||||||| ||||| ||| | | |||||||||||| ||||| || ||||||    
T  51382240 aaggaggtgtttcacggggagcaggcacaggatttctgccaccagatcgaacggaaga 51382297  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 64 - 260
Target Start/End: Complemental strand, 51857958 - 51857762
Alignment:
Q  64 ggcggtcgtggttggaggtggacaggcgaaggtgcttcatggcaaatttggaatcaatggaaataagagaattccatgacttgcaaacgcaactgagttt 163  Q
    |||||||| |||||||||| |||| ||||||||||||||| |  |||| |||||||   || ||||||||||||||||||||||| | ||||| |||||     
T  51857958 ggcggtcgaggttggaggttgacaagcgaaggtgcttcatagtgaattcggaatcatgagagataagagaattccatgacttgcagatgcaacggagttg 51857859  T
Q  164 aaggaggtgtttcacagggagaagggataagatttctgccacaagatcaaatggaagaaatggaggagagttggtgggaggcagtggtgttagggtt 260  Q
    |||||| | |||||| |||||  || | |  ||||||| ||| ||||| || | |||||||||| |||| ||||| |||||| |||||||| |||||    
T  51857858 aaggagatttttcacggggagctggcacagaatttctgtcacgagatcgaacgaaagaaatggaagagaattggtaggaggcggtggtgtttgggtt 51857762  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 51221896 - 51222005
Alignment:
Q  69 tcgtggttggaggtggacaggcgaaggtgcttcatggcaaatttggaatcaatggaaataagagaattccatgacttgcaaacgcaactgagtttaagga 168  Q
    ||||||||| |||| |||| |||||| |||||| ||||||| ||  |||||   || ||||||||||||||||||||||| | ||| | ||||| || ||    
T  51221896 tcgtggttgaaggttgacaagcgaagttgcttcttggcaaaatttaaatcatgagagataagagaattccatgacttgcagatgcagcggagttgaatga 51221995  T
Q  169 ggtgtttcac 178  Q
    ||||||||||    
T  51221996 ggtgtttcac 51222005  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 51763692 - 51763744
Alignment:
Q  126 ataagagaattccatgacttgcaaacgcaactgagtttaaggaggtgtttcac 178  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||    
T  51763692 ataagagaattccatgacttgcagacgcaacagagttgaaggagatgtttcac 51763744  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 25611720 - 25611801
Alignment:
Q  89 gcgaaggtgcttcatggcaaatttggaatcaatggaaataagagaattccatgacttgcaaacgcaactgagtttaaggagg 170  Q
    ||||||||| ||| || |||| |||| |||| | || || |||||||||||||||||||| ||||||| || || |||||||    
T  25611720 gcgaaggtgtttcttgacaaaattgggatcattcgatattagagaattccatgacttgcagacgcaacagaattgaaggagg 25611801  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 51782148 - 51781991
Alignment:
Q  64 ggcggtcgtggttggaggtggacaggcgaaggtgcttcatggcaaatttggaatcaatggaaataagagaattccatgacttgcaaacgcaactgagttt 163  Q
    |||| |||||||| ||||| |||| ||||| ||| ||  | || ||||| ||||||  ||| |||||||||||||||||||| || || |  | ||||||    
T  51782148 ggcgatcgtggttagaggttgacaagcgaaagtgttttttagcgaatttagaatcatgggagataagagaattccatgacttacagacacggcggagttt 51782049  T
Q  164 aaggaggtgtttcacagggagaagggataagatttctgccacaagatcaaatggaaga 221  Q
    || ||| |||||||| ||||| ||  | | ||||||||| || ||||| || ||||||    
T  51782048 aatgagatgtttcacggggagcagacacaggatttctgcaaccagatcgaacggaaga 51781991  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 45693604 - 45693668
Alignment:
Q  84 gacaggcgaaggtgcttcatggcaaatttggaatcaatggaaataagagaattccatgacttgca 148  Q
    |||| ||||||||| ||| | |||||||||| |||||| || || ||||||||||| ||||||||    
T  45693604 gacatgcgaaggtgattcttagcaaatttgggatcaattgagattagagaattccacgacttgca 45693668  T

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Target: scaffold0244 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 16353 - 16291
Alignment:
Q  354 ttccaaagtgctagtcagacgtattagacctttcttggatgattctattggccctctttaaag 416  Q
    ||||||||| ||||| || ||||||||||||||||||||||||| ||||||||||||| ||||    
T  16353 ttccaaagtactagttaggcgtattagacctttcttggatgattttattggccctcttcaaag 16291  T

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Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 431
Target Start/End: Complemental strand, 800 - 723
Alignment:
Q  354 ttccaaagtgctagtcagacgtattagacctttcttggatgattctattggccctctttaaagttctttcattcctaa 431  Q
    ||||||||| || || ||| |||| | ||||||||||||||||| ||||||||||||  |||  ||||||||||||||    
T  800 ttccaaagttcttgtgagatgtatcaaacctttcttggatgattttattggccctctccaaaactctttcattcctaa 723  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 41147 - 41232
Alignment:
Q  129 agagaattccatgacttgcaaacgcaactgagtttaaggaggtgtttcacagggagaagggataagatttctgccacaagatcaaa 214  Q
    |||||||||||||||||||| ||||||| || ||  ||||||  ||||||||||||  |  ||| |||||| ||||||||||||||    
T  41147 agagaattccatgacttgcagacgcaacggaattgtaggaggaatttcacagggagtcgacataggatttcagccacaagatcaaa 41232  T

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