View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20000_high_5 (Length: 280)
Name: NF20000_high_5
Description: NF20000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20000_high_5 |
 | |
|
| [»] chr5 (7 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 15528275 - 15528554
Alignment:
| Q |
1 |
gccaaattcaggttatcttgtgatcttagatgaagaagcacaaacttattcttgttttggtttgtccaaagacaatagaatcaagaattttccactacct |
100 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15528275 |
gccaaattcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggtttgtccaaagacaatagaatcaagaattttcctctacct |
15528374 |
T |
|
| Q |
101 |
cagaacaaaaatgtaaccatcaattattcatctggtgtaaacagtcaaactggacatgcaaacacatacagtgaagaagctatgttcattccagtgttga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15528375 |
cagaacaaaaatgtaaccatcaattattcatctggtgtaaacagtcaaactggacatgcaaacacatacggtgaagaagctatgttcattccagtgttga |
15528474 |
T |
|
| Q |
201 |
atcaaccattgtcttcgaatcgctactatgttataagaaggaaggggaagtatcaagggtatgtatttatttaatcattt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15528475 |
atcaaccattgtcttcgaatcgctactatgttataagaaggaaggggaagtatcaagggtatgtatttatttaatcattt |
15528554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 2 - 275
Target Start/End: Original strand, 15545713 - 15545989
Alignment:
| Q |
2 |
ccaaattcaggttatcttgtgatcttagatgaagaagcacaaacttattcttgttttggtttgtccaaagacaatagaatcaagaattttccactacctc |
101 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||||||| |||||||| | ||||||||||||| ||| ||| ||||||||||||||||||| | |||| |
|
|
| T |
15545713 |
ccaaattcaagttatcttgtgatattggatgaagaagctcaaacttactgctgttttggtttgtgcaaggaccatagaatcaagaattttcctatccctc |
15545812 |
T |
|
| Q |
102 |
agaacaaaaatgtaaccatcaattattcatctggtgtaaacagtca---aactggacatgcaaacacatacagtgaagaagctatgttcattccagtgtt |
198 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||| || || | | | |||| || | ||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
15545813 |
agaacaaagaggtaaccatcaattatacatcttgtatagaaaatatgataactagagaaataaacacatacagtgaagaagccatgttcattccagtatt |
15545912 |
T |
|
| Q |
199 |
gaatcaaccattgtcttcgaatcgctactatgttataagaaggaaggggaagtatcaagggtatgtatttatttaat |
275 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
15545913 |
gaatcaaccgttgtcttcgaatcgctactatgttataagaagggaggggaaatatcaagggtatgtatttatttaat |
15545989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 173 - 275
Target Start/End: Original strand, 15522295 - 15522397
Alignment:
| Q |
173 |
gaagaagctatgttcattccagtgttgaatcaaccattgtcttcgaatcgctactatgttataagaaggaaggggaagtatcaagggtatgtatttattt |
272 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
15522295 |
gaagaagctatgttcattccagtattgaatcaaccattgtcttctaatcgctactatgttataagaagggaggggaaatatcaagggtatgtatttattt |
15522394 |
T |
|
| Q |
273 |
aat |
275 |
Q |
| |
|
||| |
|
|
| T |
15522395 |
aat |
15522397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 15522145 - 15522268
Alignment:
| Q |
2 |
ccaaattcaggttatcttgtgatcttagatgaagaagcacaaacttattcttgttttggtttgtccaaagacaatagaatcaagaattttccactacctc |
101 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
15522145 |
ccaaattcaagttatcttgtgatattggatgaagtagctcaaacttactcttgttttggtttgtcaaaagacaatagaatcaagaattttcctttacctc |
15522244 |
T |
|
| Q |
102 |
agaacaaaaatgtaaccatcaatt |
125 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
15522245 |
agaacaaaaatttaaccatcaatt |
15522268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 170 - 280
Target Start/End: Original strand, 15518002 - 15518111
Alignment:
| Q |
170 |
agtgaagaagctatgttcattccagtgttgaatcaaccattgtcttcgaatcgctactatgttataagaaggaaggggaagtatcaagggtatgtattta |
269 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
15518002 |
agtgaagaagctatgttcattccagtattaaatcaaccattgtcttctaatcgctactacgttataagaaggaagggaaagaatcaagggtatgta-tta |
15518100 |
T |
|
| Q |
270 |
tttaatcattt |
280 |
Q |
| |
|
|||||| |||| |
|
|
| T |
15518101 |
tttaataattt |
15518111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 15517854 - 15517975
Alignment:
| Q |
1 |
gccaaattcaggttatcttgtgatcttagatgaagaagcacaaacttattcttgttttggtttgtccaaagacaatagaatcaagaattttccactacct |
100 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||||||||| |||||||| |||||||||||||||| ||| || | |||||||||||||||||| ||||| |
|
|
| T |
15517854 |
gccaaattcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggtttgtgcaaggatactagaatcaagaattttcctttacct |
15517953 |
T |
|
| Q |
101 |
cagaacaaaaatgtaaccatca |
122 |
Q |
| |
|
|| ||||||||| ||||||||| |
|
|
| T |
15517954 |
caaaacaaaaatttaaccatca |
15517975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 15550614 - 15550682
Alignment:
| Q |
197 |
ttgaatcaaccattgtcttcgaatcgctactatgttataagaaggaaggggaagtatcaagggtatgta |
265 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
15550614 |
ttgaatcaaccattgtcttcgaaccgttattatgtcatacgaaggaaggggaagaatcaagggtatgta |
15550682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University