View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20000_high_6 (Length: 250)
Name: NF20000_high_6
Description: NF20000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20000_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9970126 - 9970080
Alignment:
| Q |
1 |
ctaccggaagacgatatataacattgtttct-aaatattatgatttc |
46 |
Q |
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| T |
9970126 |
ctaccggaagacgatatataacattgtttctaaaatattatgatttc |
9970080 |
T |
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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 9969038 - 9968988
Alignment:
| Q |
188 |
aattcaatttatgttcatctacaaaattatatcttgaattcaatccatatt |
238 |
Q |
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| T |
9969038 |
aattcaatttatgttcatctaaaaaaatttatcatgaattcaatccatatt |
9968988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 9969502 - 9969446
Alignment:
| Q |
188 |
aattcaatttatgttcatctacaaaa-ttatatcttgaattcaatccatattcttgg |
243 |
Q |
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| T |
9969502 |
aatttaatttatgttcatctaaaaaaattatatcgtgaattcaatccatatttttgg |
9969446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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