View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20000_low_1 (Length: 523)
Name: NF20000_low_1
Description: NF20000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20000_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 511
Target Start/End: Complemental strand, 41444948 - 41444450
Alignment:
| Q |
8 |
ttaggatagtaagaaagctttaaaaaatgaattagaatactataagaggagtgttagaaaagaaaaataaatggtctttgggatgactattacgtaaatt |
107 |
Q |
| |
|
|||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41444948 |
ttagaatagtaagagagctttagaaaatgaattagaatactataagaggagtgttagaaaaggaaaataaatggtctttgggatgactattatgtaaatt |
41444849 |
T |
|
| Q |
108 |
agaatatattctattatcgtatgagtccctatatatacttccataatatcatataagtctctatgagaagnnnnnnnnnttaatgtcagtattgaatgac |
207 |
Q |
| |
|
| |||||||| ||| || ||| |||| |||||||||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
41444848 |
acaatatattttatcataatatcagtctctatatatacttgtataatgtcatataagtctctatatgaagaaaaaaaa-ttaatgtcagtattgaatgac |
41444750 |
T |
|
| Q |
208 |
tattttaactaccggagttcacaatcaataactatttttgaattttcagtacattgaaggacaattatgacaattcgttacacatcaaaataacaataac |
307 |
Q |
| |
|
|||||| |||| || ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
41444749 |
tattttgactaacgaagttcacaatcaataactatttttgaattttcaatacattgaaggactattatgacaatccgttacacatcaaaataac------ |
41444656 |
T |
|
| Q |
308 |
tattatatcaattatttgtaatggtcaaagagtgattgaaagaaaagctgcatgtaactcttttttcagataaatttttatttgcctcaagttaattagt |
407 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41444655 |
tattatctcaattatttgtaatggtcaaagagtgattgaaagaaaagctgcatgtaactcttttttcagataaatttttatttgcctcaagttaattagt |
41444556 |
T |
|
| Q |
408 |
g--agagttgatgtttttccaaaattgttgaagcctaaagacgctaggagaaaatacttgttactgataaaccaaaagaagcttnnnnnnntgttgttgt |
505 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41444555 |
gagagagttgatgtttttccaaaattgttgaagcctaaagacgctaggagaaaatacttgttactgataaaccaaaagaagcttaaaaaaatgttgttgt |
41444456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 41450920 - 41450846
Alignment:
| Q |
26 |
tttaaaaaatgaattagaatactataaga-ggagtgttagaaaagaaaaataaatggtctttgggatgactatta |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||| ||||||||||||| |
|
|
| T |
41450920 |
tttaaaaaatgaattagaatactataagagggagtgttagaaaaagaaaaaaaatgttcttagggatgactatta |
41450846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 36218603 - 36218514
Alignment:
| Q |
202 |
aatgactattttaactaccggagttcacaatcaataactatttttgaattttcagtacattgaaggacaattatgacaattcgttacacat |
292 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||| |||| |||||| |||||||| |||| ||||| || ||| ||||||||| |
|
|
| T |
36218603 |
aatgactattttaactaatgaagtgcacaatcaataacta-ttttaaatttttgatacattgatggactattattactatttgttacacat |
36218514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University