View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20000_low_2 (Length: 403)
Name: NF20000_low_2
Description: NF20000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20000_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 85 - 385
Target Start/End: Original strand, 391193 - 391497
Alignment:
| Q |
85 |
attacatttaagtaaaaaatatagatgatttttgaattatttggtataaggaaaacggaagaaagaaagttaaaagttttctcttaccatgtatt----t |
180 |
Q |
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| T |
391193 |
attacatttaagtaaaaaatatagatgatttttgaattatttggtataaggaaaacggaagaaagaaagttaaaagttttctcataccatgtatttattt |
391292 |
T |
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| Q |
181 |
atttatttattttataaaaatttaccctatttgaataagttaattgaccaaattaatcaatttttaagttaagtaactaaattgatttaaaataaattaa |
280 |
Q |
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| T |
391293 |
atttatttattttataaaattttaccctatttgaataagttaattgaccaaattaatcaatttttaagttaagtaactaaattgatttaaaataaattaa |
391392 |
T |
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| Q |
281 |
gaaaccaaagtagtatttaagccttcattacatcagccacttatattacctagtaggctgtactagaagtagaaggtccacagttggaccaaactttttc |
380 |
Q |
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| T |
391393 |
gaaatcaaagtagtatttaagccttcatgacatcagccacttatattacctagtaggctgtactagaagtagaaggtccacagttggaccaaactttttc |
391492 |
T |
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| Q |
381 |
caagg |
385 |
Q |
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| T |
391493 |
caagg |
391497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 391079 - 391143
Alignment:
| Q |
1 |
ttgaaataatacgaggagttgagcaattaaaagtaggaggactagcgcctataaccctatttcat |
65 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
391079 |
ttgaaataatacgaggagttgcgcaattaaaagtaggaggactagcgcctataaccctatttcat |
391143 |
T |
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