View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20000_low_3 (Length: 370)
Name: NF20000_low_3
Description: NF20000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20000_low_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 111 - 370
Target Start/End: Complemental strand, 24710201 - 24709943
Alignment:
| Q |
111 |
aatcttcctgaggagaattagacgaccaattattattattcttgtcgaaggaacaacaatgttcttgaagcatagaacaaaagcaatattgcatatggat |
210 |
Q |
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| T |
24710201 |
aatcttcctgaggagaattagacgaccaattattattatttttgtcgaaggaacaacaatgttcttgaagcatagaacaaaagcaatattgcatatggat |
24710102 |
T |
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| Q |
211 |
caataaaacaatatagcacgctcaaatttaatgtagaannnnnnnnnatcgatgcaagaacattatgttcttgcacggtggaagcataccgatattgcag |
310 |
Q |
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| T |
24710101 |
caataaaacaatatagcatgctcaaatttaatgtagaa-ttttttttatcgatgcaagaacattatgttcttgcacagtggaagcataccgatattgcag |
24710003 |
T |
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| Q |
311 |
ctggttcaataaaacagtatagcatgctcaaatgtggaacaatatagcatcattgacatg |
370 |
Q |
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| T |
24710002 |
ctggttcaataaaacagtatagcatgttcaaatgtggaacaatatagcatcattgacatg |
24709943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 22471911 - 22472038
Alignment:
| Q |
111 |
aatcttcctgaggagaattagacgaccaattattattattcttgtcgaaggaacaacaatgttcttgaagcatagaacaaaagcaatattgcatatggat |
210 |
Q |
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|||||||||||||||||||||| ||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
22471911 |
aatcttcctgaggagaattagaagaccaatgttt-ttgtt-ttgtcgaaggaacaacaatgttcttgaagcatagaacaaaagcaattatgcatctggat |
22472008 |
T |
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| Q |
211 |
caataaaacaatatagcacgctcaaattta |
240 |
Q |
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| T |
22472009 |
taataaaacaatgtggcatgctcaaattta |
22472038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 370
Target Start/End: Original strand, 22472106 - 22472168
Alignment:
| Q |
313 |
ggttcaataaaacagtatagcatgctca-----aatgtggaacaatatagcatcattgacatg |
370 |
Q |
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| T |
22472106 |
ggttcaataaaacagtatagcatgctcaaactcaaagaggaacaatatagcttcattgacatg |
22472168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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