View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20000_low_4 (Length: 338)

Name: NF20000_low_4
Description: NF20000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20000_low_4
NF20000_low_4
[»] chr3 (18 HSPs)
chr3 (196-338)||(390385-390522)
chr3 (1-68)||(390988-391055)
chr3 (94-160)||(43904982-43905046)
chr3 (94-160)||(8821639-8821703)
chr3 (94-160)||(37508496-37508560)
chr3 (94-160)||(39697220-39697284)
chr3 (93-161)||(20080081-20080147)
chr3 (94-168)||(390809-390882)
chr3 (94-160)||(10206971-10207035)
chr3 (94-160)||(22371200-22371264)
chr3 (94-160)||(24095404-24095468)
chr3 (94-160)||(26996325-26996389)
chr3 (94-160)||(32767685-32767749)
chr3 (94-160)||(44677482-44677546)
chr3 (94-160)||(49363249-49363313)
chr3 (94-160)||(54773752-54773816)
chr3 (92-160)||(18741126-18741192)
chr3 (116-160)||(55013012-55013056)
[»] chr6 (7 HSPs)
chr6 (94-160)||(4820260-4820324)
chr6 (93-160)||(2689061-2689126)
chr6 (94-160)||(2075449-2075513)
chr6 (94-160)||(3610959-3611023)
chr6 (94-160)||(5327590-5327654)
chr6 (94-160)||(28944977-28945041)
chr6 (93-160)||(23628369-23628434)
[»] chr5 (5 HSPs)
chr5 (94-160)||(9581588-9581652)
chr5 (94-160)||(18842319-18842383)
chr5 (94-160)||(8267818-8267882)
chr5 (94-160)||(5042257-5042321)
chr5 (94-160)||(35099003-35099067)
[»] chr4 (8 HSPs)
chr4 (93-160)||(40609619-40609684)
chr4 (94-160)||(30079855-30079919)
chr4 (94-160)||(41486141-41486205)
chr4 (94-160)||(5932155-5932219)
chr4 (94-160)||(21617192-21617256)
chr4 (98-145)||(6520834-6520879)
chr4 (93-160)||(7627857-7627922)
chr4 (93-160)||(33860656-33860721)
[»] chr8 (8 HSPs)
chr8 (94-160)||(1633888-1633952)
chr8 (94-160)||(35564298-35564362)
chr8 (94-160)||(41520977-41521041)
chr8 (94-160)||(45529244-45529308)
chr8 (95-160)||(16966794-16966857)
chr8 (94-160)||(11017814-11017878)
chr8 (94-160)||(34718124-34718188)
chr8 (93-160)||(29440519-29440584)
[»] chr7 (5 HSPs)
chr7 (94-160)||(41402516-41402580)
chr7 (94-160)||(13729735-13729799)
chr7 (94-160)||(39231726-39231790)
chr7 (94-160)||(39331994-39332058)
chr7 (94-157)||(35452571-35452632)
[»] chr1 (7 HSPs)
chr1 (94-160)||(756865-756929)
chr1 (94-160)||(8411716-8411780)
chr1 (94-160)||(1852949-1853013)
chr1 (94-160)||(3603120-3603184)
chr1 (94-160)||(4608161-4608225)
chr1 (94-160)||(33024569-33024633)
chr1 (94-160)||(34040498-34040562)
[»] chr2 (4 HSPs)
chr2 (94-160)||(18176949-18177013)
chr2 (94-160)||(18723603-18723667)
chr2 (93-160)||(30546366-30546431)
chr2 (94-160)||(37257458-37257523)
[»] scaffold0321 (1 HSPs)
scaffold0321 (99-160)||(19645-19704)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 196 - 338
Target Start/End: Complemental strand, 390522 - 390385
Alignment:
Q  196 aaatagtagtactctatctttccttcttctaatccattttctcaatgcttccaaccacatcgttaaagattgagatagagagaaaactgattatcttatc 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||     ||||    
T  390522 aaatagtagtactctatctttccttcttctaatccattttctcaatcctaccaaccacatcgtaaaagattgagatagagagaaaactgat-----tatc 390428  T
Q  296 accgacaacaccaaaaccccatcatcacaatcacaatcacaat 338  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  390427 accgacaacaccaaaaccctatcatcacaatcacaatcacaat 390385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 391055 - 390988
Alignment:
Q  1 catgttcaccatccgatttaacaccatattttaaaaaactcttaacgattatgtttttcatttgagga 68  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  391055 catgttcaccatccaatttaacatcatattttaaaaaactcttaatgactatgtttttcatttgagga 390988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 43905046 - 43904982
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||| ||||||||||||||||  |||||||||||||||||| ||| |||||||||||| ||||||||    
T  43905046 aaaagtaatgtgagtatgaga--gagaaagttgttacaaaaattatcactaaatggatgttcaaata 43904982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 8821703 - 8821639
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  |||||||||||||||||| ||  |||||||| ||| ||||||||    
T  8821703 aaaaataatgtgagtatgaga--gagaaagttgttacaaaagttgtcactaaatagatgttcaaata 8821639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 37508496 - 37508560
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||| ||||||||||||||||  |||||||||||| ||||| ||| |||||||||||| ||||||||    
T  37508496 aaaagtaatgtgagtatgaga--gagaaagttgttgcaaaagttatcactaaatggatgttcaaata 37508560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 39697220 - 39697284
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||| ||||||||||||||||  |||||||||||||||||| ||| ||| |||||||| ||||||||    
T  39697220 aaaagtaatgtgagtatgaga--gagaaagttgttacaaaaattatcacaaaatggatgttcaaata 39697284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 20080147 - 20080081
Alignment:
Q  93 taaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaatac 161  Q
    ||||||||||||||||||||||  ||||||||||| |||||| ||  || ||||||||| |||||||||    
T  20080147 taaaaataatgtgagtatgaga--gagaaagttgtcacaaaaattgtcattaaatggatgttcaaatac 20080081  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 390882 - 390809
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaac-actaaatggatattcaaatactatgtta 168  Q
    ||||||||||||||||||||  ||| ||||||||| ||||| ||| | ||||||||||| |||||||| |||||||    
T  390882 aaaaataatgtgagtatgag--agaaaaagttgttgcaaaagttatcaactaaatggatgttcaaatattatgtta 390809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 10206971 - 10207035
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||| ||||||||||||||||  |||||||||||| ||||| ||  |||||||||||| ||||||||    
T  10206971 aaaagtaatgtgagtatgaga--gagaaagttgttgcaaaagttgtcactaaatggatgttcaaata 10207035  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 22371264 - 22371200
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||| |||||||||  |||||| || |||||||| ||| |||||||||||| ||||||||    
T  22371264 aaaaataatgtaagtatgaga--gagaaaattattacaaaagttatcactaaatggatgttcaaata 22371200  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 24095404 - 24095468
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||||||||||  |||||||||||| |||||| ||| ||  |||||||| ||||||||    
T  24095404 aaaaataatgtgagtatgag--agagaaagttgtcacaaaaattatcataaaatggatgttcaaata 24095468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 26996389 - 26996325
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  |||||||||||||||||| ||   |||||||| || ||||||||    
T  26996389 aaaaataatgtgagtatgaga--gagaaagttgttacaaaagttgttactaaatgaatgttcaaata 26996325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 32767749 - 32767685
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  |||||| || || ||||| ||  |||||||||||||||||||||    
T  32767749 aaaaataatgtgagtatgaga--gagaaaattattgcaaaagttgtcactaaatggatattcaaata 32767685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 44677482 - 44677546
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||||||||||  ||||||| ||||| ||||| ||  |||||||||||| ||||||||    
T  44677482 aaaaataatgtgagtatgag--agagaaaattgttgcaaaagttgtcactaaatggatgttcaaata 44677546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 49363249 - 49363313
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||| ||||||||||||||||  |||||||||||| ||||| ||  |||||||||||| ||||||||    
T  49363249 aaaagtaatgtgagtatgaga--gagaaagttgttgcaaaagttgtcactaaatggatgttcaaata 49363313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 54773752 - 54773816
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||| |||||||||||  ||||||||||||| |||| ||  |||||||||||| ||||||||    
T  54773752 aaaaataatatgagtatgaga--gagaaagttgttataaaagttgtcactaaatggatgttcaaata 54773816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 18741192 - 18741126
Alignment:
Q  92 ataaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||  |||||||||| ||||||||||| ||| ||  |||| ||| ||||||||    
T  18741192 ataaaaataatgtgagtat--gaaagagaaaattgttacaaaaattatcaaaaaattgatgttcaaata 18741126  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 55013056 - 55013012
Alignment:
Q  116 agagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||| ||||| ||| |||||||||||| ||||||||    
T  55013056 agagaaagttgttgcaaaagttatcactaaatggatgttcaaata 55013012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 4820324 - 4820260
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  |||||||||||| ||||| ||| |||||||||||| ||||||||    
T  4820324 aaaaataatgtgagtatgaga--gagaaagttgttgcaaaagttatcactaaatggatgttcaaata 4820260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 2689061 - 2689126
Alignment:
Q  93 taaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  |||||||||||| |||||| ||  || ||||||||| ||||||||    
T  2689061 taaaaataatgtgagtatgag--agagaaagttgtcacaaaaattgtcattaaatggatgttcaaata 2689126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 2075449 - 2075513
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||||||||||  ||||||||||||| |||||  |  |||||||||||| ||||||||    
T  2075449 aaaaataatgtgagtatgag--agagaaagttgttgcaaaagctgtcactaaatggatgttcaaata 2075513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 3610959 - 3611023
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||| ||||||||||||||||  || ||||||||| ||||| ||| |||||||||||| ||||||||    
T  3610959 aaaagtaatgtgagtatgaga--gaaaaagttgttgcaaaagttatcactaaatggatgttcaaata 3611023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 5327590 - 5327654
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||| |||||||||||  ||||||||||||| |||| ||  |||||||||||| ||||||||    
T  5327590 aaaaataatatgagtatgaga--gagaaagttgttataaaagttgtcactaaatggatgttcaaata 5327654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 28944977 - 28945041
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||| |||||||  ||||||||||| | |||||| ||| ||| |||||||||||||||||    
T  28944977 aaaaataatgttagtatga--aagagaaagttataacaaaagttatcacaaaatggatattcaaata 28945041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 23628434 - 23628369
Alignment:
Q  93 taaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||| ||||||||||| ||| ||  |||| |||||| ||| || ||||||||||||||||||    
T  23628434 taaaaataatatgagtatgagatagaaaa--ttgtcacaaaaattatcattaaatggatattcaaata 23628369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 9581652 - 9581588
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||  ||||||||||||| |||||| ||| |||||||||||| ||||||||    
T  9581652 aaaaataatgtgagtatga--aagagaaagttgtcacaaaagttatcactaaatggatgttcaaata 9581588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 18842319 - 18842383
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  |||||||||||| ||||| ||| |||||||||||| ||||||||    
T  18842319 aaaaataatgtgagtatgaga--gagaaagttgttgcaaaagttatcactaaatggatgttcaaata 18842383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 8267818 - 8267882
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  |||||||||||| ||||| ||  |||||||||||| ||||||||    
T  8267818 aaaaataatgtgagtatgaga--gagaaagttgttgcaaaaattgtcactaaatggatgttcaaata 8267882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 5042321 - 5042257
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  || ||||||||| ||||| ||  |||||||||||| ||||||||    
T  5042321 aaaaataatgtgagtatgaga--gataaagttgttgcaaaaattgtcactaaatggatgttcaaata 5042257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 35099003 - 35099067
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||||||||||  ||||||||||||| ||||| ||  |||||||| ||| ||||||||    
T  35099003 aaaaataatgtgagtatgag--agagaaagttgttgcaaaagttgtcactaaatagatgttcaaata 35099067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 40609684 - 40609619
Alignment:
Q  93 taaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||||||||||||  ||||||||||| |||||| ||| || ||||||||| ||||||||    
T  40609684 taaaaataatgtgagtatgaga--gagaaagttgtcacaaaagttatcattaaatggatgttcaaata 40609619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 30079919 - 30079855
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  |||||||||||| ||||| ||  |||||||||||| ||||||||    
T  30079919 aaaaataatgtgagtatgaga--gagaaagttgttgcaaaagttgtcactaaatggatgttcaaata 30079855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 41486141 - 41486205
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||| ||||||||||||||||  |||||||||||| ||||| ||| |||||||||||| ||||||||    
T  41486141 aaaagtaatgtgagtatgaga--gagaaagttgttgcaaaagttatcactaaatggatgttcaaata 41486205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 5932155 - 5932219
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||||||||||  ||||||||||||| ||||| ||  |||||||||||| || |||||    
T  5932155 aaaaataatgtgagtatgag--agagaaagttgttgcaaaagttgtcactaaatggatgtttaaata 5932219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 21617256 - 21617192
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  ||||||||||| |||||| ||  ||| |||||||| ||||||||    
T  21617256 aaaaataatgtgagtatgaga--gagaaagttgtaacaaaaattgtcacaaaatggatgttcaaata 21617192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 6520834 - 6520879
Alignment:
Q  98 ataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaa 145  Q
    |||||||||||||||||  |||||||||||||||||| ||| ||||||    
T  6520834 ataatgtgagtatgaga--gagaaagttgttacaaaagttatcactaa 6520879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 7627922 - 7627857
Alignment:
Q  93 taaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  ||||||| || | |||||| ||| || |||||| |||||||||||    
T  7627922 taaaaataatgtgagtatgag--agagaaaattatcacaaaaattatcattaaatgaatattcaaata 7627857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 33860721 - 33860656
Alignment:
Q  93 taaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||| ||||||||||||||  ||||||||||| |||||| ||  ||| |||||||| ||||||||    
T  33860721 taaaaatgatgtgagtatgaga--gagaaagttgtcacaaaaattgtcaccaaatggatgttcaaata 33860656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 1633888 - 1633952
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  |||||||||||| ||||| ||  |||||||||||| ||||||||    
T  1633888 aaaaataatgtgagtatgaga--gagaaagttgttgcaaaagttgtcactaaatggatgttcaaata 1633952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 35564362 - 35564298
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||||||||||| |||  |||||||| ||||| ||| |||||||||||| ||||||||    
T  35564362 aaaaataatgtgagtatgagataga--aagttgttgcaaaaattatcactaaatggatgttcaaata 35564298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 41521041 - 41520977
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  |||||| ||||| ||||| ||| |||||||||||| ||||||||    
T  41521041 aaaaataatgtgagtatgaga--gagaaaattgttgcaaaagttatcactaaatggatgttcaaata 41520977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 45529244 - 45529308
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  |||||||||||||||||| ||  ||||||||| || ||||||||    
T  45529244 aaaaataatgtgagtatgaga--gagaaagttgttacaaaaattgtcactaaatgaatgttcaaata 45529308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 16966857 - 16966794
Alignment:
Q  95 aaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||||||||||  |||||||||||| ||||| ||  |||||||||||| ||||||||    
T  16966857 aaaataatgtgagtatgaga--gagaaagttgttgcaaaagttgtcactaaatggatgttcaaata 16966794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 11017878 - 11017814
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  |||||||||||| ||||| ||  || ||||||||| ||||||||    
T  11017878 aaaaataatgtgagtatgaga--gagaaagttgttgcaaaagttgtcattaaatggatgttcaaata 11017814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 34718188 - 34718124
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  ||||||||||| |||||| ||  ||| |||||||| ||||||||    
T  34718188 aaaaataatgtgagtatgaga--gagaaagttgtaacaaaagttgtcacaaaatggatgttcaaata 34718124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 29440519 - 29440584
Alignment:
Q  93 taaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||| |||||||||||||||  |||||||||| |||||| ||| ||| ||||| || ||||||||    
T  29440519 taaaaatgatgtgagtatgagaa--agaaagttgtcacaaaagttatcaccaaatgaatgttcaaata 29440584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 41402580 - 41402516
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||| |||||||||||  |||||||||||| ||||| ||  |||||||||||||||||||||    
T  41402580 aaaaataatatgagtatgaga--gagaaagttgttgcaaaagttgtcactaaatggatattcaaata 41402516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 13729799 - 13729735
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||||||||||||  ||||||||||| ||||| ||  ||| |||||||| ||||||||    
T  13729799 aaaaataatgtgagtatgagaa--agaaagttgttgcaaaagttgtcacaaaatggatgttcaaata 13729735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 39231726 - 39231790
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||||||||||  ||||||||||||| ||||| ||  |||||| ||||| ||||||||    
T  39231726 aaaaataatgtgagtatgag--agagaaagttgttgcaaaagttgtcactaactggatgttcaaata 39231790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 39332058 - 39331994
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||| |||||||||||| |||  |||||||||||||||||| ||  |||||||||||| ||||||||    
T  39332058 aaaagtaatgtgagtataaga--gagaaagttgttacaaaagttgtcactaaatggatgttcaaata 39331994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 35452571 - 35452632
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaa 157  Q
    |||||| ||||||||||||||  ||||||||||| |||||| ||| ||| |||||||| |||||    
T  35452571 aaaaattatgtgagtatgaga--gagaaagttgtcacaaaaattatcaccaaatggatgttcaa 35452632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 756929 - 756865
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||||||||||||  ||||||||||| ||||| ||  |||||||||||| ||||||||    
T  756929 aaaaataatgtgagtatgagaa--agaaagttgttgcaaaagttgtcactaaatggatgttcaaata 756865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 8411716 - 8411780
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  |||||||||||| ||||| ||  |||||||||||| ||||||||    
T  8411716 aaaaataatgtgagtatgaga--gagaaagttgttgcaaaagttgtcactaaatggatgttcaaata 8411780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 1852949 - 1853013
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||||||||||  ||||||||||||| ||||| ||  |||||||| ||| ||||||||    
T  1852949 aaaaataatgtgagtatgag--agagaaagttgttgcaaaagttgtcactaaatagatgttcaaata 1853013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 3603184 - 3603120
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||| ||||||||||||||||  |||||||||||| ||||| ||  |||||||||||| ||||||||    
T  3603184 aaaagtaatgtgagtatgaga--gagaaagttgttgcaaaagttgtcactaaatggatgttcaaata 3603120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 4608225 - 4608161
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  ||||||||||| |||||| ||| |||  || |||||||||||||    
T  4608225 aaaaataatgtgagtatgaga--gagaaagttgtaacaaaagttatcacagaacggatattcaaata 4608161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 33024569 - 33024633
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||||||||||  ||||||||||||| ||||| ||  |||||||| ||| ||||||||    
T  33024569 aaaaataatgtgagtatgag--agagaaagttgttgcaaaagttgtcactaaatagatgttcaaata 33024633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 34040498 - 34040562
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||||||||||  |||||||||||||  |||| ||| ||| |||||||| ||||||||    
T  34040498 aaaaataatgtgagtatgag--agagaaagttgttgtaaaagttatcacaaaatggatgttcaaata 34040562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 18177013 - 18176949
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  |||||||||||| ||||| ||  |||||||| ||| ||||||||    
T  18177013 aaaaataatgtgagtatgaga--gagaaagttgttgcaaaagttgtcactaaatagatgttcaaata 18176949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 18723667 - 18723603
Alignment:
Q  94 aaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||||||||  ||||||||||| |||||| ||  ||| |||||||| ||||||||    
T  18723667 aaaaataatgtgagtatgaga--gagaaagttgtaacaaaaattgtcacaaaatggatgttcaaata 18723603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 30546366 - 30546431
Alignment:
Q  93 taaaaataatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||| ||| |||||||  |||||| |||| |||||| ||| || ||||||||||||||||||    
T  30546366 taaaaataatatgaatatgaga--gagaaaattgtcacaaaaattatcattaaatggatattcaaata 30546431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 37257523 - 37257458
Alignment:
Q  94 aaaaataatgtgagta-tgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    |||||||||||||||| |||||  |||||||||||| ||||| ||  |||||||||||| ||||||||    
T  37257523 aaaaataatgtgagtaatgaga--gagaaagttgttgcaaaagttgtcactaaatggatgttcaaata 37257458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 19704 - 19645
Alignment:
Q  99 taatgtgagtatgagaaagagaaagttgttacaaaatttaacactaaatggatattcaaata 160  Q
    ||||||||||||||||  |||||||||||| ||||| ||  |||||||||||| ||||||||    
T  19704 taatgtgagtatgaga--gagaaagttgttgcaaaagttgtcactaaatggatgttcaaata 19645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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