View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20000_low_5 (Length: 310)

Name: NF20000_low_5
Description: NF20000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20000_low_5
NF20000_low_5
[»] chr7 (2 HSPs)
chr7 (13-310)||(32562718-32563018)
chr7 (193-291)||(5459554-5459652)
[»] chr2 (5 HSPs)
chr2 (193-290)||(29966602-29966699)
chr2 (188-292)||(18114603-18114706)
chr2 (193-310)||(16195376-16195493)
chr2 (215-289)||(30462607-30462680)
chr2 (197-284)||(21538901-21538987)
[»] chr8 (3 HSPs)
chr8 (186-303)||(20706627-20706743)
chr8 (186-250)||(35104208-35104272)
chr8 (193-276)||(10516928-10517010)
[»] chr6 (1 HSPs)
chr6 (200-294)||(14760801-14760895)
[»] chr4 (5 HSPs)
chr4 (208-284)||(16404483-16404559)
chr4 (186-292)||(20748140-20748246)
chr4 (193-240)||(17743480-17743527)
chr4 (209-290)||(21545953-21546034)
chr4 (186-282)||(17651384-17651480)
[»] chr1 (2 HSPs)
chr1 (194-237)||(40817403-40817446)
chr1 (213-292)||(34488093-34488171)
[»] chr5 (1 HSPs)
chr5 (193-291)||(16687561-16687658)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 32563018 - 32562718
Alignment:
Q  13 aaaatcaaaacaa---tactaaggacaaagaaagaatctgnnnnnnnggcagcagttaagtcttaatatgaaattagttaagtcctaacaatttaaaagg 109  Q
    |||||||||||||   |||||||||||||||||||| |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32563018 aaaatcaaaacaaggctactaaggacaaagaaagaacctgtttttttggcagcagttaagtcttaatatgaaattagttaagtcctaacaatttaaaagg 32562919  T
Q  110 cctaaagatttgagtaaataaaaaggacttaatcattcttgaaattttttattcaaaaatatgaagaccatacaaaagagtccttgtttgaagattgcta 209  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  32562918 cctaaagatttgagtaaataaaaaggacttaatcatttttgaaattttttattcaaaaatatgaagaccacacaaaagagtccttgtttgaagattgata 32562819  T
Q  210 actcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttct 309  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  32562818 actcatcaaattctttcttgagaagttttgattcagatttgaaaactttgcttcaaatggataatgtcgttgaattgtactaggaatatcctttgtttct 32562719  T
Q  310 t 310  Q
    |    
T  32562718 t 32562718  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 291
Target Start/End: Complemental strand, 5459652 - 5459554
Alignment:
Q  193 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtacta 291  Q
    ||||||||||| || ||   |||||||||| |||||  |||| ||||| |||  |||||||||||||| || |||||||||||  ||||||| ||||||    
T  5459652 ttgtttgaagagtgttagtgcatcaaattcgtccttaggaagctttgaatcagttttgaaaactttgcctctaatggataatgatgttgaatagtacta 5459554  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 193 - 290
Target Start/End: Complemental strand, 29966699 - 29966602
Alignment:
Q  193 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtact 290  Q
    ||||||||| ||| | ||||||||||| ||  | |||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| |||||    
T  29966699 ttgtttgaatatttccaactcatcaaaatcacctttgagaagctttgattcatatttgaaaactttgcttcaattggataatgtcgttgaatagtact 29966602  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 292
Target Start/End: Original strand, 18114603 - 18114706
Alignment:
Q  188 agtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgt 287  Q
    |||| ||||||||||||||| ||| |||||||||| ||||||||||| ||||| || |||||||||||||||| || |||||||| | | ||||||| ||    
T  18114603 agtcattgtttgaagattgccaacgcatcaaattcgtccttgagaagctttga-tcgtatttgaaaactttgcctctaatggatagtatcgttgaatagt 18114701  T
Q  288 actag 292  Q
    |||||    
T  18114702 actag 18114706  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 310
Target Start/End: Complemental strand, 16195493 - 16195376
Alignment:
Q  193 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 292  Q
    |||||||| |||| | ||||||||||| || ||||||||||| ||||||| | ||||||||  ||| | |||||| ||||||||  | ||||||| |||     
T  16195493 ttgtttgaggattaccaactcatcaaaatcatccttgagaagctttgatttagatttgaaattttttcctcaaattgataatgttttcgaattgttctat 16195394  T
Q  293 gaatgtcctttgtttctt 310  Q
    ||| ||| |||| |||||    
T  16195393 gaaagtcatttgcttctt 16195376  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 30462607 - 30462680
Alignment:
Q  215 tcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtac 289  Q
    |||||||| ||||| ||||| |||||| ||||||||||| |||||| || |||||||||||| ||| ||| ||||    
T  30462607 tcaaattcatcctttagaagctttgat-catatttgaaagctttgcctctaatggataatgtcgttaaatagtac 30462680  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 284
Target Start/End: Complemental strand, 21538987 - 21538901
Alignment:
Q  197 ttgaagattgctaactcatcaaattcttccttgagaagttttgattcatattt-gaaaactttgcttcaaatggataatgtggttgaat 284  Q
    ||||||||||| ||| |||||||||| | ||||||||| || ||| ||||||| ||||||||||| |||| |||||||| | |||||||    
T  21538987 ttgaagattgccaacacatcaaattcgttcttgagaagctt-gat-catattttgaaaactttgcctcaattggataatatcgttgaat 21538901  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 303
Target Start/End: Original strand, 20706627 - 20706743
Alignment:
Q  186 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaatt 285  Q
    |||||| ||||||||||| ||  | | |||||||||| || |||||||| ||||||  | ||||| ||||||||| || |||||||||||| |||||||     
T  20706627 agagtcgttgtttgaagagtgtcagcgcatcaaattcctctttgagaagctttgatgaa-atttgtaaactttgcctctaatggataatgtcgttgaata 20706725  T
Q  286 gtactaggaatgtccttt 303  Q
    ||||||| ||||||||||    
T  20706726 gtactagaaatgtccttt 20706743  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 35104272 - 35104208
Alignment:
Q  186 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttg 250  Q
    |||| ||||| ||||||||||| ||||||||||| || | ||||||||| ||||||||| |||||    
T  35104272 agagcccttggttgaagattgccaactcatcaaagtcattcttgagaagctttgattcagatttg 35104208  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 10517010 - 10516928
Alignment:
Q  193 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgt 276  Q
    |||||||||| |||  ||||||||||| || ||||  ||||| ||||||| | |||||||| |||||| |||||||||||||||    
T  10517010 ttgtttgaaggttgtcaactcatcaaaatcgtcctcaagaagctttgatttaaatttgaaa-ctttgcctcaaatggataatgt 10516928  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 14760801 - 14760895
Alignment:
Q  200 aagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactagga 294  Q
    |||||||  ||||||||||| |||||||| | ||| ||||||||| |||| |||||||||| || | ||| |||||| ||||||| |||||||||    
T  14760801 aagattgtcaactcatcaaaatcttccttcataagctttgattcagatttaaaaactttgcctcgattgggtaatgtcgttgaatagtactagga 14760895  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 16404559 - 16404483
Alignment:
Q  208 taactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaat 284  Q
    |||| |||||||||| | ||||||||||||||| ||| ||||||||||||| | ||||||||| || || |||||||    
T  16404559 taacacatcaaattcgttcttgagaagttttgaatcagatttgaaaacttttcctcaaatggagaacgtcgttgaat 16404483  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 292
Target Start/End: Original strand, 20748140 - 20748246
Alignment:
Q  186 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaatt 285  Q
    |||||| |||||||||||  || ||| |||||||||| | ||||||||| ||||| |||  ||||||||| |||  || |||||||||||| ||| |||     
T  20748140 agagtcgttgtttgaagagggccaacacatcaaattcgttcttgagaagctttgaatcaattttgaaaacgttgtctctaatggataatgtcgttaaata 20748239  T
Q  286 gtactag 292  Q
    |||||||    
T  20748240 gtactag 20748246  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 17743480 - 17743527
Alignment:
Q  193 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttga 240  Q
    ||||||||||| ||  ||| ||||||||||||||||||||||||||||    
T  17743480 ttgtttgaagagtgtcaacgcatcaaattcttccttgagaagttttga 17743527  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 21546034 - 21545953
Alignment:
Q  209 aactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtact 290  Q
    ||||||||||| || ||||||||||  |||||||   ||||||||| ||||| |||| |||||||||| ||| ||| |||||    
T  21546034 aactcatcaaaatcgtccttgagaatctttgatttggatttgaaaattttgcctcaattggataatgtcgttaaatagtact 21545953  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 17651480 - 17651384
Alignment:
Q  186 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttga 282  Q
    |||||| |||||||| | | || ||||||||||| |||| ||||| ||| |||  |||| |||||||||  || |||||| |||||||||| |||||    
T  17651480 agagtcgttgtttgatgctggccaactcatcaaaatctttcttgataagattttgttcaaatttgaaaatatttcttcaattggataatgtcgttga 17651384  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 40817446 - 40817403
Alignment:
Q  194 tgtttgaagattgctaactcatcaaattcttccttgagaagttt 237  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  40817446 tgtttgaagattgctaactcatcaacttcatccttgagaagttt 40817403  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 34488093 - 34488171
Alignment:
Q  213 catcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 292  Q
    |||||||||| | ||||||||||||| || || ||||||||||||||| || |||| |||| || ||||||| |||||||    
T  34488093 catcaaattcgttcttgagaagttttaat-cagatttgaaaactttgcctctaatgaataaagtcgttgaatagtactag 34488171  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 291
Target Start/End: Complemental strand, 16687658 - 16687561
Alignment:
Q  193 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtacta 291  Q
    ||||||||||||||  |||||||||||||| | ||| ||||| ||||| ||  ||||||||||||| | || |||||| |||||  |||||| ||||||    
T  16687658 ttgtttgaagattggaaactcatcaaattcatactttagaagctttga-tcggatttgaaaactttccctctaatggacaatgtcattgaatagtacta 16687561  T

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