View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20000_low_9 (Length: 237)
Name: NF20000_low_9
Description: NF20000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20000_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 3345916 - 3346120
Alignment:
| Q |
16 |
aatattgaaagctaggtgagagtttttggaaataccccctagacgaccaaactgaaaaagatgatctagaaagttaccgtgatgaagtgttgataagcct |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
3345916 |
aatattgaaagctaggtgagagtttttggaaatatcccctagaccaccaaactgaaaaagatgatctaaaaagttaccgtgatcaagtgttgataagcct |
3346015 |
T |
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| Q |
116 |
taccagccatatgactccaaaaccgctgtaaaagtcgcatggaaaaaataagcagtcttgatcttccaaacaactacagtcagataaacaatgaatatca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3346016 |
taccagccatatgactccaaaaccgctgtaaaagtcgcattgaaaaaataagcagtcttgatcttccaaacaactacagtcagataaacaatgaatatca |
3346115 |
T |
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| Q |
216 |
gtatc |
220 |
Q |
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||||| |
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| T |
3346116 |
gtatc |
3346120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 3328660 - 3328811
Alignment:
| Q |
16 |
aatattgaaagctaggtgagagtttttggaaata-ccccctagacgaccaaactgaaaaagatgatctagaaagttaccgtgatgaagtgttgataagcc |
114 |
Q |
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|||||||||||||| ||||||||||||||||| | |||||||| | |||||| |||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
3328660 |
aatattgaaagctacgtgagagtttttggaaaaaaccccctagcccaccaaattgaaaaagatgatctagaaagttaccgtgatgaactattgataagcc |
3328759 |
T |
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| Q |
115 |
ttaccagccatatgactccaaaaccgctgtaaaagtcgcatggaaaaaataa |
166 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||| ||||||||| |
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| T |
3328760 |
ttaccagccatatgactccaaagccgctgtaaaagttgcatttaaaaaataa |
3328811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 16100779 - 16100675
Alignment:
| Q |
68 |
tgaaaaagatgatctagaaagttaccgtgatgaagtgttgataagccttaccagcc----atatgactccaaaaccgc-tgtaaaagtcgcatggaaaaa |
162 |
Q |
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|||| ||||||||||||||||||||| | |||||||||| |||||||| ||||| | ||||||||||||| |||| | ||||||| ||| |||||| |
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| T |
16100779 |
tgaagaagatgatctagaaagttaccataatgaagtgtttataagcctaaccagacataaatatgactccaaacccgcacgaaaaagtcacattgaaaaa |
16100680 |
T |
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| Q |
163 |
ataag |
167 |
Q |
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||||| |
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| T |
16100679 |
ataag |
16100675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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