View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20001_high_12 (Length: 390)
Name: NF20001_high_12
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_high_12 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] scaffold0854 (1 HSPs) |
| |
|
| [»] scaffold0836 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 155 - 385
Target Start/End: Complemental strand, 25389586 - 25389356
Alignment:
| Q |
155 |
attatttattgctagaaataaaatactataaaaatacaattaaaactatgttacaattcatactcatgcaccatatatataactcatatcatatgcaata |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25389586 |
attatttattgctagaaataaaatactataaaaatacaattaaaactatgttacaattcatactcatgcatcatatatataactcatatcatatgcaata |
25389487 |
T |
|
| Q |
255 |
aacctaattctaattcgtaactacttaattgtgcctttgaaagnnnnnnnncttctttattggtcagtagctaaatttagaaggaaacaaattatactca |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25389486 |
aacctaattctaattcgtaactacttaattgtgcctttgaaagaaaaaaaacttctttattggtcagtagctaaatttagaaggaaacaaattatactca |
25389387 |
T |
|
| Q |
355 |
catatactacttcttcattgaaaagaattaa |
385 |
Q |
| |
|
||||||||||| |||||||||||| |||||| |
|
|
| T |
25389386 |
catatactactacttcattgaaaataattaa |
25389356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 25389749 - 25389622
Alignment:
| Q |
31 |
gtggcggaggcagaaattttcaatagtgggagcatcaaatcaaattctannnnnnnnnnnnnn-ataaatggacctaattatatactttcacattcataa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25389749 |
gtggcggaggcagaaattttcaatagtgggagcatcaaatcaaatttcattttttttattttttataaatggacctaattatatactttcacattcataa |
25389650 |
T |
|
| Q |
130 |
aatgtttgaggattaaaaattgttgatt |
157 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
25389649 |
aatgtttgaggattaaaaattgttgatt |
25389622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 159 - 390
Target Start/End: Complemental strand, 16975675 - 16975448
Alignment:
| Q |
159 |
tttattgctagaaataaaatactataaaaatacaattaaaactatgttacaattcatactcatgcaccatatatataactcatatcatatgcaataaacc |
258 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||| | |
|
|
| T |
16975675 |
tttattgctagaaa--aaata-tataaaattacaattaaaactatgttacaattcatactcatacat----tgtataactcatatcatatgcaataaaac |
16975583 |
T |
|
| Q |
259 |
taattctaattcgtaactacttaattgtgcctttgaaagnnnnnnnncttctttattgg-----------tcagtagctaaatttagaaggaaacaaatt |
347 |
Q |
| |
|
||||||| ||||| |||||||||||||| || || |||| | |||| ||||| |||||||||||||||||||||||| |
|
|
| T |
16975582 |
-----ctaattcctaacttcttaattgtgccttagagagaaaaaaaacttcataattgtgaacaagatgttcagtggctaaatttagaaggaaacaaatt |
16975488 |
T |
|
| Q |
348 |
atactcacatatactacttcttcattgaaaagaattaactttt |
390 |
Q |
| |
|
||||| |||||||||| ||||||||| |||||||||||||| |
|
|
| T |
16975487 |
atacttacatatacta---cttcattgacaagaattaactttt |
16975448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 16975846 - 16975800
Alignment:
| Q |
31 |
gtggcggaggcagaaattttcaatagtgggagcatcaaatcaaattc |
77 |
Q |
| |
|
||||||||| ||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
16975846 |
gtggcggagccaggaattttcaatagtgggggcatcaaatcaaattc |
16975800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 155 - 390
Target Start/End: Complemental strand, 38438104 - 38437862
Alignment:
| Q |
155 |
attatttattgctagaaataaaatactataaaaatacaattaaaactatgttacaattcatactcatgcaccatat-------atataactcatatcata |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38438104 |
attatttattgctagaaataaaatactataaaaatacaattaaaactatgttacaattcatactcatgcaccatattacatatatataactcatatcata |
38438005 |
T |
|
| Q |
248 |
tgcaataaacctaattctaattcgtaactacttaattgtgcctttgaaagnnnnnnnncttctttattggtcagtagctaaatttagaaggaaacaaatt |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38438004 |
tgcaataaacctaattctaattcgtaactacttaattgtgcctttgaaagaaaaaaaacttctttattggtcagtagctaaatttagaaggaaacaaatt |
38437905 |
T |
|
| Q |
348 |
atactcacatatactacttcttcattgaaaagaattaactttt |
390 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
38437904 |
atactcacatataccactacttcattgaaaagaattaactttt |
38437862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 38438267 - 38438140
Alignment:
| Q |
31 |
gtggcggaggcagaaattttcaatagtgggagcatcaaatcaaattctannnnnnnnnnnnnn-ataaatggacctaattatatactttcacattcataa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38438267 |
gtggcggaggcagaaattttcaatagtgggagcatcaaatcaaattccatttttttatttttttataaatggacctatttatatactttcacattcataa |
38438168 |
T |
|
| Q |
130 |
aatgtttgaggattaaaaattgttgatt |
157 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
38438167 |
aatgtttgaggattaaaaattgttgatt |
38438140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 12586912 - 12586957
Alignment:
| Q |
99 |
tggacctaattatatactttcacattcataaaatgtttgaggatta |
144 |
Q |
| |
|
|||||| |||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
12586912 |
tggacccaattgtatactttcacattcatcaagtgtttgaggatta |
12586957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 372 - 441
Alignment:
| Q |
318 |
tcagtagctaaatttagaaggaaacaaattatactcacatatactacttcttcattgaaaagaattaactttt |
390 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
372 |
tcagtggctaaatttagaaggaaacaaattatactcacatatacta---cttcattgacaagaattagctttt |
441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0836
Description:
Target: scaffold0836; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 5117 - 5180
Alignment:
| Q |
94 |
ataaatggacctaattatatactttcacattcataaaatgtttgaggattaaaaattgttgatt |
157 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
5117 |
ataaatggatctaattttatactttcacattcatcaagtgtttgaggattaaaaattgatgatt |
5180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 5240 - 5278
Alignment:
| Q |
182 |
ataaaaatacaattaaaactatgttacaattcatactca |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5240 |
ataaaaatacaattaaaactatgttacaattcatactca |
5278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 49602456 - 49602501
Alignment:
| Q |
99 |
tggacctaattatatactttcacattcataaaatgtttgaggatta |
144 |
Q |
| |
|
|||||| |||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
49602456 |
tggacccaattgtatactttcacattcatcaagtgtttgaggatta |
49602501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 22329460 - 22329504
Alignment:
| Q |
100 |
ggacctaattatatactttcacattcataaaatgtttgaggatta |
144 |
Q |
| |
|
||||| |||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
22329460 |
ggacccaattgtatactttcacattcatcaagtgtttgaggatta |
22329504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University