View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20001_high_14 (Length: 366)
Name: NF20001_high_14
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 5419651 - 5419312
Alignment:
| Q |
16 |
tcatcttcgagttttctcgaattgatagcaggattgataattaacgcattagagtttcaaattaagttaattttcatgtttataacctatccattgtttt |
115 |
Q |
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| T |
5419651 |
tcatcttcgagttttctcgaattgatagcaggattgataattaacgcattagagtttcaaattaagttaattttcatgtttataacttatccattgtttt |
5419552 |
T |
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| Q |
116 |
tcatgtttcgctgttgcttattctttatggatccttttgggataaggaaattggggaaagatatcatctttgggattatgttgagaatttggagtgttgt |
215 |
Q |
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| T |
5419551 |
tcatgtttcgctgttgcttattctttatggatccttttgggataaggaaattggggaaagatatcatctttgggattatgttgagaatttggagtgttgt |
5419452 |
T |
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| Q |
216 |
gtttggatatattgaaccatatgttaggaaattgtataaaaggaatgaatcaatttggagtgtaatgtctaggtttgtatggggaatattgtggtcaatt |
315 |
Q |
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| T |
5419451 |
gtttggatatattgaaccatatgttaggaaattgtataaagggaatgaatcaatttggagtgtaatgtctaggtttgtatggggaatattgtggtcaatt |
5419352 |
T |
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| Q |
316 |
tatgtttgttgtgttttagttggtttattggtttcttcat |
355 |
Q |
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| T |
5419351 |
tatgtttgttgtgttttggttggtttattggtttcttcat |
5419312 |
T |
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