View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20001_high_19 (Length: 347)

Name: NF20001_high_19
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20001_high_19
NF20001_high_19
[»] chr1 (3 HSPs)
chr1 (16-330)||(49952347-49952661)
chr1 (46-127)||(4644012-4644093)
chr1 (46-128)||(18575538-18575619)
[»] chr4 (3 HSPs)
chr4 (16-144)||(11696423-11696551)
chr4 (46-126)||(5587653-5587732)
chr4 (46-142)||(16598500-16598595)
[»] chr5 (4 HSPs)
chr5 (16-144)||(27994583-27994704)
chr5 (65-141)||(5302069-5302145)
chr5 (48-144)||(22931356-22931452)
chr5 (18-125)||(5589200-5589307)
[»] chr7 (1 HSPs)
chr7 (46-141)||(49052307-49052404)
[»] scaffold0200 (1 HSPs)
scaffold0200 (21-98)||(25779-25856)
[»] chr3 (2 HSPs)
chr3 (20-126)||(50174026-50174132)
chr3 (45-118)||(9193250-9193323)
[»] chr2 (1 HSPs)
chr2 (46-95)||(10836761-10836810)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 49952661 - 49952347
Alignment:
Q  16 atataaaagagaatgaaattgaacagtgctaattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttat 115  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49952661 atataaaagagaatgaaattgaatagtgctaattgatgtgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttat 49952562  T
Q  116 ttgtgattgtgtccgtacaagattttctctatgtccatgctgcctcattgctttgtatactttctatttatagttccattttctttttcagatgttgtcc 215  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49952561 ttgtgattgggtccgtacaagattttctctatgtccatgatgcctcattgctttgtatactttctatttatagttccattttctttttcagatgttgtcc 49952462  T
Q  216 accaccaataccaacagcaggctatattccaggaaataacatgggagatcaaacaattcctatgagatttccaagatatttctcaggttcatcttcaacc 315  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49952461 accaccaataccaacagcaggatatattccagcaaataacatgggagatcaaacaattcctatgagatttccaagatatttctcaggttcatcttcaacc 49952362  T
Q  316 cacattccaccacca 330  Q
    |||||||||||||||    
T  49952361 cacattccaccacca 49952347  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 4644093 - 4644012
Alignment:
Q  46 aattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtgt 127  Q
    |||||||||||||||||| |||| ||||||||||| ||||||| | | ||||| ||||||||||||| || |||||||||||    
T  4644093 aattgatatgactaaatattttttcttaaattttgctcatttagtataagagtgcctaaatgatattgatatgtgattgtgt 4644012  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 18575619 - 18575538
Alignment:
Q  46 aattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtgtc 128  Q
    ||||||| ||| ||||||||||| |||||||||| ||||| | || |||| || ||||||  |||||||||||||||||||||    
T  18575619 aattgatttgattaaatactttttcttaaatttt-ttcatatcatatgagggtgcctaaacaatatttatttgtgattgtgtc 18575538  T

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Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 11696423 - 11696551
Alignment:
Q  16 atataaaagagaatgaaattgaacagtgctaattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttat 115  Q
    |||||||||||||| |||||||| |||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  11696423 atataaaagagaataaaattgaatagtgctgattgatgtaactaaatacttttacttaaattttgttcgtttaatgtgagagtgcctaaatgatatttat 11696522  T
Q  116 ttgtgattgtgtccgtacaagattttctc 144  Q
    |||||||||||||  ||||||||||||||    
T  11696523 ttgtgattgtgtctatacaagattttctc 11696551  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 5587732 - 5587653
Alignment:
Q  46 aattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtg 126  Q
    ||||||| |||||||||| |||| |||||||||| ||||||| ||||||| || ||||||  |||||||||||||||||||    
T  5587732 aattgatttgactaaatattttttcttaaatttt-ttcatttcatgtgagggtgcctaaacaatatttatttgtgattgtg 5587653  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 16598595 - 16598500
Alignment:
Q  46 aattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtgtccgtacaagattttc 142  Q
    ||||||| | ||||||||||||| ||| |||||| ||||||| || |||| ||  |||||  ||||| |||||||||||||||| |  |||||||||    
T  16598595 aattgatttaactaaatacttttcctttaatttt-ttcatttcatatgagggtgtctaaacaatattcatttgtgattgtgtccatgaaagattttc 16598500  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 27994704 - 27994583
Alignment:
Q  16 atataaaagagaatgaaattgaacagtgctaattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttat 115  Q
    |||||||||||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||      ||||||| ||||||||||||||||    
T  27994704 atataaaagagaataaaattgaatagtgctaattaatatgattaaatacttttacttaaattttgttcat------tgagagtgcctaaatgatatttat 27994611  T
Q  116 ttgtgattgtgtccgtacaagattttctc 144  Q
    || ||||||||| | ||||||||||||||    
T  27994610 ttatgattgtgt-catacaagattttctc 27994583  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 5302069 - 5302145
Alignment:
Q  65 ttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtgtccgtacaagatttt 141  Q
    |||| ||||||||||| ||||||||||||||||| ||||||| | ||| |||||||| | || || |||||||||||    
T  5302069 tttttcttaaattttgctcatttaatgtgagagtgcctaaataacattgatttgtgactatgcccatacaagatttt 5302145  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 22931452 - 22931356
Alignment:
Q  48 ttgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtgtccgtacaagattttctc 144  Q
    ||||| |||||||||| ||||  || ||||||||| |||| ||||||| ||| | |||| ||||||||||| | |||||||| |  |||||||||||    
T  22931452 ttgatgtgactaaatattttttgtttaattttgttaattttatgtgagtgtatccaaataatatttatttggggttgtgtccatgaaagattttctc 22931356  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 5589200 - 5589307
Alignment:
Q  18 ataaaagagaatgaaattgaacagtgctaattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttattt 117  Q
    |||||||||||  |||||||| | ||  | ||||| ||| |||||| ||||  || |||||| ||||||| ||||||| || ||||||| ||||||||||    
T  5589200 ataaaagagaacaaaattgaataatgtcatttgatttgattaaatattttttttttaatttttttcatttcatgtgagggtgcctaaataatatttattt 5589299  T
Q  118 gtgattgt 125  Q
     |||||||    
T  5589300 atgattgt 5589307  T

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Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 49052404 - 49052307
Alignment:
Q  46 aattgatatgactaaatactttta--cttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgtgattgtgtccgtacaagatttt 141  Q
    ||||||| |||||||||| ||||   |||||| |||  ||||||||||||| || |||||||||||||| |||||||||||||||| |||||||||||    
T  49052404 aattgatgtgactaaatattttttttcttaaactttactcatttaatgtgaaaggacctaaatgatattgatttgtgattgtgtccatacaagatttt 49052307  T

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Target: scaffold0200 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 25856 - 25779
Alignment:
Q  21 aaagagaatgaaattgaacagtgctaattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagt 98  Q
    |||| |||| |||||||| | ||  |||||||||||||||||| |||| ||||||||||| |||||||||||||||||    
T  25856 aaagtgaataaaattgaataatgtcaattgatatgactaaatattttttcttaaattttgctcatttaatgtgagagt 25779  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 50174026 - 50174132
Alignment:
Q  20 aaaagagaatgaaattgaacagtgctaattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttgt 119  Q
    |||||||||| |||||||| | ||  ||||||| |||||||||  |||| |||||||||||||||||| | ||||| || ||||||| | ||| ||||||    
T  50174026 aaaagagaataaaattgaataatgtcaattgatgtgactaaattatttttcttaaattttgttcatttcacgtgagtgtgcctaaataagattgatttgt 50174125  T
Q  120 gattgtg 126  Q
    | |||||    
T  50174126 ggttgtg 50174132  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 9193250 - 9193323
Alignment:
Q  45 taattgatatgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttatttg 118  Q
    ||||||||||| ||||||||||||  || | |||| || |||| ||||||| ||| |||||| |||||||||||    
T  9193250 taattgatatggctaaatactttttatttagttttattgatttcatgtgagtgtatctaaataatatttatttg 9193323  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 10836810 - 10836761
Alignment:
Q  46 aattgatatgactaaatacttttacttaaattttgttcatttaatgtgag 95  Q
    |||||||||||||||||||||||  || ||||||||| |||| |||||||    
T  10836810 aattgatatgactaaatactttttatttaattttgttaattttatgtgag 10836761  T

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