View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20001_high_21 (Length: 341)
Name: NF20001_high_21
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 35580781 - 35581104
Alignment:
| Q |
1 |
aaagaaattacctcaacatggagaagatataaatctgaatctataatcaagttttgtccaatatgaaaaatccatcgcggtacaattttgtcaatccata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35580781 |
aaagaaattacctcaacatggagaagatataaatctgaatctataatcaagttttgtccaatatgaaaaatccatcgcggtacaattttgtcaatccata |
35580880 |
T |
|
| Q |
101 |
gcccaaagtttcttgggaagcaccaaatcagtctgctgttaccgggactcacaggaatacnnnnnnntatcaaagcaaatttcttctgaactgatgattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35580881 |
gcccaaagtttcttgggaagcaccaaatcagtctgctgttaccgggactcacaggaatacaaaaaaatatcaaagcaaatttcttctgaactgatgattt |
35580980 |
T |
|
| Q |
201 |
ctgcattaaaatatattatgtaacgcccacataaaatttgatgcacatttttcgtaatataagtaaggatcatagctactcaatttattaccttagtttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35580981 |
ctgcattaaaatatattatgtaacgcccatataaaatttgatgcacatttttcgtaatataagtaaggatcatagctactcaatttattaccttagtttc |
35581080 |
T |
|
| Q |
301 |
ttcagaagatacaggtttaattag |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
35581081 |
ttcagaagatacaggtttaattag |
35581104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 3 - 319
Target Start/End: Original strand, 35591658 - 35591975
Alignment:
| Q |
3 |
agaaattacctcaacatggagaagatataaatctgaatctataatcaagttttgtccaatatgaaaaatccatcgcggtacaattttgtcaatccatagc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
35591658 |
agaaattacctcaacatggagaagatataaatctgaatctagaatcaagttttgtccaacatgaaaaatccatcgcggtacaattttgtcaatccacaac |
35591757 |
T |
|
| Q |
103 |
ccaaagtttcttgggaagcaccaaatcagtctgctgttaccgggactcacaggaatacnnnnnnntatcaaagcaaatttcttctgaactgatgatttct |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35591758 |
ccaaagtttcttgggaagcaccaaatcagtctgctattaccgggactaacaggaatacaaataaagatcaaagcaaatttcttctgaactgatgatttct |
35591857 |
T |
|
| Q |
203 |
gcattaaaatatattatgtaacgcccac-ataaaatttgatgcacatttttcgtaatataagtaaggatcatagctactcaatttattaccttagtttct |
301 |
Q |
| |
|
|||| |||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
35591858 |
gcatcaaaatatattttgtaacgcccacaaaaaaatttgatgcacatttttcgtaatataagtaaggatcatagccactcaatttgttaccttagtttct |
35591957 |
T |
|
| Q |
302 |
tcagaagatacaggttta |
319 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
35591958 |
tcagaagatgcaggttta |
35591975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 35566000 - 35566206
Alignment:
| Q |
6 |
aattacctcaacatggagaagatataaatctgaatctataatcaagttttgtccaatatgaaaaatccatcgcggtacaattttgtcaatccatagccca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||| ||| | ||| |
|
|
| T |
35566000 |
aattacctcaacatggagaagatataaatctgaatctagaatcaagttttgtcccatatgaagaatccatcgtggtacaattttgtcggcccacactcca |
35566099 |
T |
|
| Q |
106 |
aagtttcttgggaagcaccaaatcagtctgctgttaccgggactcacaggaatacnnnnnnntatcaaagcaaatttcttctgaactgatgatttctgca |
205 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||| |||| || ||||||||||||||||||||||||||||| |
|
|
| T |
35566100 |
aagtttcttggaaagcaccaaatcagtctgcttttaccaggactcacaggtatacaaataaagatcatagaaaatttcttctgaactgatgatttctgca |
35566199 |
T |
|
| Q |
206 |
ttaaaat |
212 |
Q |
| |
|
||||||| |
|
|
| T |
35566200 |
ttaaaat |
35566206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University