View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20001_high_24 (Length: 282)
Name: NF20001_high_24
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 53 - 269
Target Start/End: Original strand, 54154295 - 54154509
Alignment:
| Q |
53 |
ttgtggctgtctttaggtgactgctgtctaggttacctaaaaaggattatctttttctaatacttaatttacgggtaaccataaatacacatgacttctt |
152 |
Q |
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| T |
54154295 |
ttgtgactgtctttaggtgactgctgtctaggttacctaaaa-ggattatctttttctaatacttaatttacgggtaaccataaatacacatgacttctt |
54154393 |
T |
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| Q |
153 |
gatgcaatggtgacaaagaggaagaacacatttttaattaacataaaaacaactacaattgcattattgttaaaagactcttcttgaaaataccaaaact |
252 |
Q |
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| T |
54154394 |
gatgcaatggtgacaaagaggaagaacacatttttaattaacataaaaacaactacaattgcattattgtt-aaagactcttcttgaaaataccaaaact |
54154492 |
T |
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| Q |
253 |
ataacaacaaacctgtt |
269 |
Q |
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| T |
54154493 |
ataacaacaaacctgtt |
54154509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 54154198 - 54154247
Alignment:
| Q |
1 |
aaaacaaacagaaattatcctttgaatctcctcacctgtccaattcccac |
50 |
Q |
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| T |
54154198 |
aaaacaaacagaaattatcctttgaatctcctcacctgtccaattcccac |
54154247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 1139831 - 1139772
Alignment:
| Q |
206 |
tacaattgcattattgttaaaagactcttcttgaaaataccaaaactataacaacaaacct |
266 |
Q |
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| T |
1139831 |
tacaattgcattgttgttaaa-gactctttttaaaaatatcaaaactttaacaacaaacct |
1139772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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