View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20001_high_9 (Length: 439)
Name: NF20001_high_9
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 54 - 411
Target Start/End: Complemental strand, 32969627 - 32969267
Alignment:
| Q |
54 |
gtttggagtagtggtatacttggtagttaaaaacaacacttatgaaaaggacataggatgtgatgctccatagttcaatggtatcattgtt--aaattac |
151 |
Q |
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| T |
32969627 |
gtttggagtagtggtatacttggtagttaaaaacaacacttatgaaaaggacataggatgtgatgctccatagttcaatggtatcattgttttaaattac |
32969528 |
T |
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| Q |
152 |
ttatgacttgccaaaatttgaagaaaaaataaattccctctatgcataaacttcagatattcacaagcagttttgctgagccaaatgtgctcaaaagcat |
251 |
Q |
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| T |
32969527 |
ttatgacttgccaaaatttgaagaaaaaataaattccctctatgcataaacttcagatattcacaagcagttttgctgagccaaatgtgctcaaaagcat |
32969428 |
T |
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| Q |
252 |
atacatttcaagtctacaagagatgcatagtgct-atcggaatatatacaatgattactttatatacaatctctattctattctagtttgatgctgcttc |
350 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32969427 |
atacatttcaagtctacaagagatgcctagtgctaatcggaatatatacaatgataactttatatacaatctctattctattctagtttgatgctgcttc |
32969328 |
T |
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| Q |
351 |
tatttaacttgtgatgttttcttgtggtaatgatttattagcactctgtcacaagtgtatg |
411 |
Q |
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| T |
32969327 |
tatttaacttgtgatgttttcttgtggtaatgatttattagcactctgtcacaagtgtatg |
32969267 |
T |
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