View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20001_low_1 (Length: 930)
Name: NF20001_low_1
Description: NF20001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20001_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 715; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 10 - 824
Target Start/End: Original strand, 45546358 - 45547186
Alignment:
| Q |
10 |
catcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatgatcaaatacattctgaccatgcttcttaatactgtccctaactttcctagc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45546358 |
catcatcatcaggaatatgctgagtttcagtgtcatgtccactaccatgatcaaatacattctgaccatgcttcttaatactgtccctaactttcctagc |
45546457 |
T |
|
| Q |
110 |
ctttgccttcaccctactcataacagacttcttctcaggctcaggctcaggctcagtgggctcttctggtccatgtgtcaatgtcactgcatccaaaata |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
45546458 |
ctttgccttcaccctactcataacagacttcttctcaggctcaggctcagaattagtgggctcttctggtccatgtgtcagtgtcacttcatccaaaata |
45546557 |
T |
|
| Q |
210 |
gattcaaataaagtagnnnnnnntgcttcaaacttaaaaactaccaagtatagtatatattaactcttgcttcaaacaaaatgatatgatacctggatat |
309 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45546558 |
gattcaaataaagtagaaaaaaatgcttcaaacttaaaaactaccaagtatagtatatattaactcttgcttcaaacaaaatgatatgatacctggatat |
45546657 |
T |
|
| Q |
310 |
ggttcaacgttaggtgagttttgttcatcgttctccccttccacatgactatgaacaactcttgaatccatgattataaattgtgaagaaaagaaactgc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45546658 |
ggttcaacgttaggtgagttttgttcatcgttctccccttccacatgactatgaacaactcttgaatccatgattataaattgtgaagaaaagaaactgc |
45546757 |
T |
|
| Q |
410 |
tataatgtagaagaacaaaaggttctactttatagagagaaacaaaacatga---------------gccattttgcatttcatatgactggagacacgt |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45546758 |
tataatgtagaagaacaaaaggttctactttatagagagaaacaaaacatgaaatagtgtcaccaataccattttgcatttcatatgactggagacacgt |
45546857 |
T |
|
| Q |
495 |
ggcacataacgacaaaataactatcatttgacacttgttgagtattatttgtgacacgtggagtcctataattggttgtttatgtcgatcagcagacata |
594 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45546858 |
ggcacataacgac-aaataactatcatttgacacttgttgagtattatttgtgacacgtggagtcctataattggttgtttatgtcgatcagcagacata |
45546956 |
T |
|
| Q |
595 |
actgctcctgtggactttggacggtgtggaaagaggtacgtactactaaccgagtatggacagtgactctacagtgttgccctgtcactttttctacagt |
694 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
45546957 |
actgctcctgtggactttggacggtgtggaaagaggtacgtactactaaccgagtatggacagtgactccacagtgttgccctgtcactttttcaatagt |
45547056 |
T |
|
| Q |
695 |
tactttaattgttctacaagtgatgataatgatgatgtgcacagatattaaatttgataattaggggtgtgtgccgacattagaagttattcatgttaca |
794 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45547057 |
tactttaattgttctacaagtgatgataatgatgatgtgcacagatattaaatttgataattaggggtgtgtgccgacattagaagttattcatgttaca |
45547156 |
T |
|
| Q |
795 |
gttagaaaatgttacttttcaagactctaa |
824 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45547157 |
gttagaaaatgttacttttcaagactctaa |
45547186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 819 - 884
Target Start/End: Original strand, 45547214 - 45547279
Alignment:
| Q |
819 |
ctctaaaaataaaaataagcattcttttacaaataaattataggaataattttttaatctgcagac |
884 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
45547214 |
ctctaaaaataaaaataagcattcttttacaaataaattatatgaataatttttttatctacagac |
45547279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 45551601 - 45551732
Alignment:
| Q |
14 |
atcatcaggaatatgctgagtttcagtgtcatgtccactaccatgatcaaatacattctgaccatgcttcttaatactgtccctaactttcctagccttt |
113 |
Q |
| |
|
||||||| || |||||||| ||||| ||| ||||||| |||||||||||| ||| | ||||| || || ||||| ||||| ||| |||| |||||||| |
|
|
| T |
45551601 |
atcatcatgagtatgctgaatttcattgttatgtccattaccatgatcaagtacttgttgaccgtgttttttaattgtgtccttaattttcttagccttt |
45551700 |
T |
|
| Q |
114 |
gccttcaccctactcataacagacttcttctc |
145 |
Q |
| |
|
||||||||| || ||| |||||| |||||||| |
|
|
| T |
45551701 |
gccttcaccttattcagaacagatttcttctc |
45551732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 339 - 393
Target Start/End: Original strand, 45551907 - 45551961
Alignment:
| Q |
339 |
gttctccccttccacatgactatgaacaactcttgaatccatgattataaattgt |
393 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45551907 |
gttctcctcttcaacatgactatgaacaactcttgaatccatgattgtaaattgt |
45551961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 887 - 927
Target Start/End: Original strand, 45547307 - 45547347
Alignment:
| Q |
887 |
aaccttaacacaactacatggtttcaagttttaatatggat |
927 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45547307 |
aaccttaacacaactatatggtttcaagttttaatctggat |
45547347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 787 - 821
Target Start/End: Original strand, 45552542 - 45552576
Alignment:
| Q |
787 |
atgttacagttagaaaatgttacttttcaagactc |
821 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45552542 |
atgttgcagttagaaaatgttacttttcaagactc |
45552576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University